scran.js/main/index.js

Single cell RNA-seq analysis in Javascript

export { initialize, terminate, wasmArraySpace, heapSize, maximumThreads } from "./wasm.js";
export { createUint8WasmArray, createInt32WasmArray, createFloat64WasmArray, free } from "./utils.js";

export * from "./initializeMatrixFromArrays.js";
export * from "./initializeMatrixFromHdf5.js";
export * from "./initializeSparseMatrixFromRds.js";
export * from "./initializeSparseMatrixFromMatrixMarket.js";

export * from "./rds.js";
export * from "./file.js"; 

export * from "./hdf5.js";
export * from "./writeSparseMatrixToHdf5.js";

export * from "./guessFeatures.js";
export * from "./block.js";
export * from "./factorize.js";

export * from "./cbind.js";
export * from "./subset.js";
export * from "./delayed.js";
export * from "./matrixStats.js";

export * from "./perCellRnaQcMetrics.js";
export * from "./perCellAdtQcMetrics.js";
export * from "./perCellCrisprQcMetrics.js";
export * from "./suggestRnaQcFilters.js";
export * from "./suggestAdtQcFilters.js";
export * from "./suggestCrisprQcFilters.js";
export * from "./filterCells.js";

export * from "./computeClrm1Factors.js";
export * from "./normalizeCounts.js";

export * from "./modelGeneVariances.js";
export * from "./chooseHvgs.js";
export * from "./runPca.js";

export * from "./findNearestNeighbors.js";
export * from "./runTsne.js";
export * from "./runUmap.js";

export * from "./buildSnnGraph.js";
export * from "./clusterGraph.js";
export * from "./clusterKmeans.js";

export * from "./mnnCorrect.js";

export * from "./scaleByNeighbors.js";

export * from "./scoreMarkers.js";
export * from "./labelCells.js";

export * from "./scoreGsdecon.js";
export * from "./hypergeometricTest.js";
export * from "./testGeneSetEnrichment.js";

export * from "./aggregateAcrossCells.js";

export * from "./ScranMatrix.js";
export * from "./MultiMatrix.js";

export * from "./realizeFile.js";

export * from "./transposeMatrix.js";