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scran.js

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Single cell RNA-seq analysis in Javascript

github.com/kanaverse/scran.js

kanaverse/scran.js

3 folders, 49 files
../
abstract/
888 B
internal/
3.4 kB
wasm/
5.9 MB
MultiMatrix.js
4.03 kB
ScranMatrix.js
4.16 kB
aggregateAcrossCells.js
7.82 kB
block.js
2.06 kB
buildSnnGraph.js
3.26 kB
cbind.js
5.41 kB
chooseHvgs.js
2.22 kB
clusterGraph.js
8.39 kB
clusterKmeans.js
7.29 kB
computeClrm1Factors.js
2.1 kB
delayed.js
4.57 kB
factorize.js
12.6 kB
file.js
1.49 kB
filterCells.js
621 B
findNearestNeighbors.js
11.4 kB
gc.js
616 B
guessFeatures.js
7.12 kB
hdf5.js
30.6 kB
hypergeometricTest.js
4.38 kB
index.js
1.9 kB
initializeMatrixFromArrays.js
7.19 kB
initializeMatrixFromHdf5.js
8.47 kB
initializeSparseMatrixFromMatrixMarket.js
3.68 kB
initializeSparseMatrixFromRds.js
1.41 kB
labelCells.js
30.1 kB
matrixStats.js
2.72 kB
mnnCorrect.js
5.73 kB
modelGeneVariances.js
7.89 kB
normalizeCounts.js
5.52 kB
perCellAdtQcMetrics.js
4.28 kB
perCellCrisprQcMetrics.js
4.05 kB
perCellRnaQcMetrics.js
4.3 kB
rds.js
9.5 kB
realizeFile.js
2.12 kB
runPca.js
8.44 kB
runTsne.js
7.41 kB
runUmap.js
6.8 kB
scaleByNeighbors.js
6.42 kB
scoreGsdecon.js
3.85 kB
scoreMarkers.js
13.3 kB
subset.js
4.95 kB
suggestAdtQcFilters.js
7.06 kB
suggestCrisprQcFilters.js
5.67 kB
suggestRnaQcFilters.js
7.31 kB
testGeneSetEnrichment.js
6.71 kB
transposeMatrix.js
2.4 kB
utils.js
6.23 kB
wasm.js
3.3 kB
writeSparseMatrixToHdf5.js
3.48 kB