vitessce
Version:
Vitessce app and React component library
407 lines (405 loc) • 13.7 kB
JavaScript
export const justHiglass = {
public: false,
initStrategy: 'auto',
version: '1.0.0',
datasets: [
{
uid: 'higlass-dataset',
name: 'HiGlass Dataset',
files: [],
},
],
name: 'HiGlass demo',
coordinationSpace: {
genomicZoomX: {
A: 0,
},
genomicZoomY: {
A: 0,
},
genomicTargetX: {
A: 1549999999.5,
},
genomicTargetY: {
A: 1549999999.5,
},
},
layout: [
{
component: 'higlass',
coordinationScopes: {
genomicZoomX: 'A',
genomicZoomY: 'A',
genomicTargetX: 'A',
genomicTargetY: 'A',
},
props: {
hgViewConfig: {
uid: 'aa',
autocompleteSource: '/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
genomePositionSearchBox: {
autocompleteServer: '//higlass.io/api/v1',
autocompleteId: 'OHJakQICQD6gTD7skx4EWA',
chromInfoServer: '//higlass.io/api/v1',
chromInfoId: 'hg19',
visible: true,
},
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
tracks: {
top: [
{
type: 'horizontal-gene-annotations',
height: 60,
tilesetUid: 'OHJakQICQD6gTD7skx4EWA',
server: '//higlass.io/api/v1',
uid: 'OHJakQICQD6gTD7skx4EWA',
options: {
name: 'Gene Annotations (hg19)',
fontSize: 10,
labelPosition: 'hidden',
labelLeftMargin: 0,
labelRightMargin: 0,
labelTopMargin: 0,
labelBottomMargin: 0,
minHeight: 24,
geneAnnotationHeight: 16,
geneLabelPosition: 'outside',
geneStrandSpacing: 4,
showMousePosition: true,
mousePositionColor: '#ff00ff',
plusStrandColor: '#fdff54',
minusStrandColor: '#68bf30',
labelColor: 'black',
trackBorderWidth: 0,
trackBorderColor: 'black',
},
},
{
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
type: 'horizontal-chromosome-labels',
height: 30,
uid: 'X4e_1DKiQHmyghDa6lLMVA',
options: {
color: '#808080',
stroke: 'black',
fontSize: 12,
fontIsLeftAligned: false,
showMousePosition: true,
mousePositionColor: '#ff00ff',
},
},
],
left: [
{
type: 'vertical-gene-annotations',
width: 60,
tilesetUid: 'OHJakQICQD6gTD7skx4EWA',
server: '//higlass.io/api/v1',
options: {
labelPosition: 'bottomRight',
name: 'Gene Annotations (hg19)',
fontSize: 10,
labelLeftMargin: 0,
labelRightMargin: 0,
labelTopMargin: 0,
labelBottomMargin: 0,
minWidth: 24,
geneAnnotationHeight: 16,
geneLabelPosition: 'outside',
geneStrandSpacing: 4,
showMousePosition: true,
mousePositionColor: '#ff00ff',
plusStrandColor: '#fdff54',
minusStrandColor: '#68bf30',
labelColor: 'black',
trackBorderWidth: 0,
trackBorderColor: 'black',
},
uid: 'dqBTMH78Rn6DeSyDBoAEXw',
},
{
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
type: 'vertical-chromosome-labels',
width: 30,
uid: 'RHdQK4IRQ7yJeDmKWb7Pcg',
options: {
color: '#777777',
stroke: 'black',
fontSize: 12,
fontIsLeftAligned: false,
minWidth: 35,
showMousePosition: true,
mousePositionColor: '#ff00ff',
},
},
],
center: [
{
uid: 'c1',
type: 'combined',
height: 600,
contents: [
{
server: '//higlass.io/api/v1',
tilesetUid: 'CQMd6V_cRw6iCI_-Unl3PQ',
type: 'heatmap',
options: {
maxZoom: null,
labelPosition: 'bottomRight',
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb',
backgroundColor: 'black',
labelLeftMargin: 0,
labelRightMargin: 0,
labelTopMargin: 0,
labelBottomMargin: 0,
labelShowResolution: true,
labelShowAssembly: true,
labelColor: '#ffffff',
labelTextOpacity: 0.5,
labelBackgroundColor: 'black',
labelBackgroundOpacity: 0.01,
colorRange: [
'#000000',
'#222e54',
'#448db2',
'#68bf30',
'#fdff54',
'#FFFFFF',
],
colorbarBackgroundColor: 'black',
colorbarBackgroundOpacity: 0.01,
colorbarPosition: 'topRight',
trackBorderWidth: 0,
trackBorderColor: 'black',
heatmapValueScaling: 'log',
showMousePosition: true,
mousePositionColor: '#ff00ff',
showTooltip: false,
extent: 'full',
zeroValueColor: null,
scaleStartPercent: '0.00000',
scaleEndPercent: '1.00000',
},
height: 500,
uid: 'GjuZed1ySGW1IzZZqFB9BA',
transforms: [
{
name: 'ICE',
value: 'weight',
},
],
},
],
options: {},
},
],
right: [],
bottom: [],
whole: [],
gallery: [],
},
layout: {
w: 12,
h: 12,
x: 0,
y: 0,
moved: false,
static: false,
},
},
},
x: 0,
y: 0,
w: 8,
h: 2,
},
{
component: 'higlass',
coordinationScopes: {
genomicZoomX: 'A',
genomicZoomY: 'A',
genomicTargetX: 'A',
genomicTargetY: 'A',
},
props: {
hgViewConfig: {
uid: 'aa',
autocompleteSource: '/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
genomePositionSearchBox: {
autocompleteServer: '//higlass.io/api/v1',
autocompleteId: 'OHJakQICQD6gTD7skx4EWA',
chromInfoServer: '//higlass.io/api/v1',
chromInfoId: 'hg19',
visible: true,
},
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
tracks: {
top: [
{
type: 'horizontal-gene-annotations',
height: 60,
tilesetUid: 'OHJakQICQD6gTD7skx4EWA',
server: '//higlass.io/api/v1',
uid: 'OHJakQICQD6gTD7skx4EWA',
options: {
name: 'Gene Annotations (hg19)',
fontSize: 10,
labelPosition: 'hidden',
labelLeftMargin: 0,
labelRightMargin: 0,
labelTopMargin: 0,
labelBottomMargin: 0,
minHeight: 24,
geneAnnotationHeight: 16,
geneLabelPosition: 'outside',
geneStrandSpacing: 4,
showMousePosition: true,
mousePositionColor: '#ff00ff',
plusStrandColor: '#fdff54',
minusStrandColor: '#68bf30',
labelColor: 'black',
trackBorderWidth: 0,
trackBorderColor: 'black',
},
},
{
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
type: 'horizontal-chromosome-labels',
height: 30,
uid: 'X4e_1DKiQHmyghDa6lLMVA',
options: {
color: '#808080',
stroke: 'black',
fontSize: 12,
fontIsLeftAligned: false,
showMousePosition: true,
mousePositionColor: '#ff00ff',
},
},
],
left: [
{
type: 'vertical-gene-annotations',
width: 60,
tilesetUid: 'OHJakQICQD6gTD7skx4EWA',
server: '//higlass.io/api/v1',
options: {
labelPosition: 'bottomRight',
name: 'Gene Annotations (hg19)',
fontSize: 10,
labelLeftMargin: 0,
labelRightMargin: 0,
labelTopMargin: 0,
labelBottomMargin: 0,
minWidth: 24,
geneAnnotationHeight: 16,
geneLabelPosition: 'outside',
geneStrandSpacing: 4,
showMousePosition: true,
mousePositionColor: '#ff00ff',
plusStrandColor: '#fdff54',
minusStrandColor: '#68bf30',
labelColor: 'black',
trackBorderWidth: 0,
trackBorderColor: 'black',
},
uid: 'dqBTMH78Rn6DeSyDBoAEXw',
},
{
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
type: 'vertical-chromosome-labels',
width: 30,
uid: 'RHdQK4IRQ7yJeDmKWb7Pcg',
options: {
color: '#777777',
stroke: 'black',
fontSize: 12,
fontIsLeftAligned: false,
minWidth: 35,
showMousePosition: true,
mousePositionColor: '#ff00ff',
},
},
],
center: [
{
uid: 'c1',
type: 'combined',
height: 600,
contents: [
{
server: '//higlass.io/api/v1',
tilesetUid: 'CQMd6V_cRw6iCI_-Unl3PQ',
type: 'heatmap',
options: {
maxZoom: null,
labelPosition: 'bottomRight',
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb',
backgroundColor: 'black',
labelLeftMargin: 0,
labelRightMargin: 0,
labelTopMargin: 0,
labelBottomMargin: 0,
labelShowResolution: true,
labelShowAssembly: true,
labelColor: '#ffffff',
labelTextOpacity: 0.5,
labelBackgroundColor: 'black',
labelBackgroundOpacity: 0.01,
colorRange: [
'#000000',
'#222e54',
'#448db2',
'#68bf30',
'#fdff54',
'#FFFFFF',
],
colorbarBackgroundColor: 'black',
colorbarBackgroundOpacity: 0.01,
colorbarPosition: 'topRight',
trackBorderWidth: 0,
trackBorderColor: 'black',
heatmapValueScaling: 'log',
showMousePosition: true,
mousePositionColor: '#ff00ff',
showTooltip: false,
extent: 'full',
zeroValueColor: null,
scaleStartPercent: '0.00000',
scaleEndPercent: '1.00000',
},
height: 500,
uid: 'GjuZed1ySGW1IzZZqFB9BA',
transforms: [
{
name: 'ICE',
value: 'weight',
},
],
},
],
options: {},
},
],
right: [],
bottom: [],
whole: [],
gallery: [],
},
layout: {
w: 12,
h: 12,
x: 0,
y: 0,
moved: false,
static: false,
},
},
},
x: 8,
y: 0,
w: 4,
h: 2,
},
],
};