vitessce
Version:
Vitessce app and React component library
118 lines (117 loc) • 2.78 kB
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{
"version": "1.0.0",
"name": "3ac0768d61c6c84f0ec59d766e123e05",
"datasets": [
{
"uid": "40334a99-2be7-4904-bc75-102609fe53e9",
"name": "40334a99-2be7-4904-bc75-102609fe53e9",
"files": [
{
"type": "cells",
"fileType": "anndata-cells.zarr",
"url": "http://127.0.0.1:8080/anndata/anndata-dense.zarr",
"options": {
"mappings": {
"UMAP": {
"key": "obsm/X_umap",
"dims": [0, 1]
}
},
"factors": ["obs/leiden"]
},
"requestInit": {
"method": "GET",
"headers": { "x-foo": "FAKE" },
"mode": "cors",
"credentials": "omit",
"cache": "no-store",
"redirect": "error",
"referrer": "FAKE",
"integrity": "FAKE"
}
},
{
"type": "cell-sets",
"fileType": "anndata-cell-sets.zarr",
"url": "http://127.0.0.1:8080/anndata/anndata-dense.zarr",
"options": [
{
"groupName": "Ledien",
"setName": "obs/leiden"
}
],
"requestInit": {
"method": "GET",
"headers": { "x-foo": "FAKE" },
"mode": "cors",
"credentials": "omit",
"cache": "no-store",
"redirect": "error",
"referrer": "FAKE",
"integrity": "FAKE"
}
},
{
"type": "expression-matrix",
"fileType": "anndata-expression-matrix.zarr",
"url": "http://127.0.0.1:8080/anndata/anndata-dense.zarr",
"options": {
"matrix": "X"
},
"requestInit": {
"method": "GET",
"headers": { "x-foo": "FAKE" },
"mode": "cors",
"credentials": "omit",
"cache": "no-store",
"redirect": "error",
"referrer": "FAKE",
"integrity": "FAKE"
}
}
]
}
],
"initStrategy": "auto",
"coordinationSpace": {
"embeddingType": {
"UMAP": "UMAP"
}
},
"layout": [
{
"component": "cellSets",
"h": 3,
"w": 3,
"x": 9,
"y": 0,
"coordinationScopes": {}
},
{
"component": "genes",
"h": 3,
"w": 3,
"x": 9,
"y": 3,
"coordinationScopes": {}
},
{
"component": "scatterplot",
"h": 3,
"w": 5,
"x": 0,
"y": 0,
"coordinationScopes": {
"embeddingType": "UMAP"
}
},
{
"component": "heatmap",
"h": 3,
"w": 9,
"x": 0,
"y": 3,
"coordinationScopes": {}
}
]
}