variant-linker
Version:
CLI for Ensembl VEP and Variant Recoder
14 lines (13 loc) • 647 B
JSON
{
"@context": "https://schema.org/",
"@type": "Configuration",
"variables": {
"transcript_consequences.*.consequence_terms": "unique:consequence_terms_variant|default:0",
"transcript_consequences.*.cadd_phred": "max:cadd_phred_variant|default:7.226",
"transcript_consequences.*.impact": "unique:impact_variant|default:LOW",
"transcript_consequences.*.hgnc_id": "unique:hgnc_id",
"transcript_consequences.*.gene_symbol": "unique:gene_symbol",
"colocated_variants.0.frequencies.*.gnomade": "gnomade_variant|default:1.626e-05",
"colocated_variants.0.frequencies.*.gnomadg": "gnomadg_variant|default:5.256e-05"
}
}