ucsc-xena-client/dist/tiesQuery.js

UCSC Xena Client. Functional genomics visualizations.

'use strict';

var Rx = require('./rx');

var docs = function docs(samples) {
	return Rx.Observable.ajax({
		url: '/api/ties/documents/list',
		headers: { 'Content-Type': 'text/plain' },
		body: JSON.stringify({ patientIds: samples }),
		responseType: 'text',
		method: 'POST'
	}).map(function (_ref) {
		var response = _ref.response;
		return JSON.parse(response).results;
	});
};

var doc = function doc(id) {
	return Rx.Observable.ajax({
		url: '/api/ties/documents/' + id,
		headers: { 'Content-Type': 'text/plain' },
		responseType: 'text',
		method: 'GET'
	}).map(function (result) {
		return JSON.parse(result.response);
	});
};

// XXX Currently, no way to limit by sample id?
var conceptMatches = function conceptMatches(patients, concept) {
	return Rx.Observable.ajax({
		url: '/api/ties/query/',
		body: {
			concept: concept,
			limit: 1000 * 1000 // try to defeat limit
		},
		responseType: 'text',
		method: 'POST'
	}).map(function (result) {
		return JSON.parse(result.response).results;
	});
};

var textMatches = function textMatches(patients, text) {
	return Rx.Observable.ajax({
		url: '/api/ties/query/',
		body: {
			text: text,
			limit: 1000 * 1000 // try to defeat limit
		},
		responseType: 'text',
		method: 'POST'
	}).map(function (result) {
		return JSON.parse(result.response).results;
	});
};

var concepts = function concepts(term) {
	return Rx.Observable.ajax({
		url: '/api/ties/search/?term=' + encodeURIComponent(term),
		responseType: 'text',
		method: 'GET'
	}).map(function (result) {
		return JSON.parse(result.response);
	});
};

var goodConcepts = function goodConcepts() {
	return Rx.Observable.create(function (observer) {
		require.ensure(['./tiesConcepts.json'], function () {
			var concepts = require('./tiesConcepts.json');
			// defer to avoid reducer re-entry
			setTimeout(function () {
				return observer.next(concepts);
			}, 0);
		});
	});
};

module.exports = {
	docs: docs,
	doc: doc,
	textMatches: textMatches,
	conceptMatches: conceptMatches,
	concepts: concepts,
	goodConcepts: goodConcepts
};