ucsc-xena-client
Version:
UCSC Xena Client. Functional genomics visualizations.
538 lines (505 loc) • 17.2 kB
JavaScript
"use strict";
/* eslint-disable */
// Copyright (c) 2013 Pieroxy <pieroxy@pieroxy.net>
// This work is free. You can redistribute it and/or modify it
// under the terms of the WTFPL, Version 2
// For more information see LICENSE.txt or http://www.wtfpl.net/
//
// For more information, the home page:
// http://pieroxy.net/blog/pages/lz-string/testing.html
//
// LZ-based compression algorithm, version 1.4.4
var LZString = function () {
// private property
var f = String.fromCharCode;
var keyStrBase64 = "ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789+/=";
var keyStrUriSafe = "ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789+-$";
var baseReverseDic = {};
function getBaseValue(alphabet, character) {
if (!baseReverseDic[alphabet]) {
baseReverseDic[alphabet] = {};
for (var i = 0; i < alphabet.length; i++) {
baseReverseDic[alphabet][alphabet.charAt(i)] = i;
}
}
return baseReverseDic[alphabet][character];
}
var LZString = {
compressToBase64: function compressToBase64(input) {
if (input == null) return "";
var res = LZString._compress(input, 6, function (a) {
return keyStrBase64.charAt(a);
});
switch (res.length % 4) {// To produce valid Base64
default: // When could this happen ?
case 0:
return res;
case 1:
return res + "===";
case 2:
return res + "==";
case 3:
return res + "=";
}
},
decompressFromBase64: function decompressFromBase64(input) {
if (input == null) return "";
if (input == "") return null;
return LZString._decompress(input.length, 32, function (index) {
return getBaseValue(keyStrBase64, input.charAt(index));
});
},
compressToUTF16: function compressToUTF16(input) {
if (input == null) return "";
return LZString._compress(input, 15, function (a) {
return f(a + 32);
}) + " ";
},
decompressFromUTF16: function decompressFromUTF16(compressed) {
if (compressed == null) return "";
if (compressed == "") return null;
return LZString._decompress(compressed.length, 16384, function (index) {
return compressed.charCodeAt(index) - 32;
});
},
//compress into uint8array (UCS-2 big endian format)
compressToUint8Array: function compressToUint8Array(uncompressed) {
var compressed = LZString.compress(uncompressed);
var buf = new Uint8Array(compressed.length * 2); // 2 bytes per character
for (var i = 0, TotalLen = compressed.length; i < TotalLen; i++) {
var current_value = compressed.charCodeAt(i);
buf[i * 2] = current_value >>> 8;
buf[i * 2 + 1] = current_value % 256;
}
return buf;
},
//decompress from uint8array (UCS-2 big endian format)
decompressFromUint8Array: function decompressFromUint8Array(compressed) {
if (compressed === null || compressed === undefined) {
return LZString.decompress(compressed);
} else {
var buf = new Array(compressed.length / 2); // 2 bytes per character
for (var i = 0, TotalLen = buf.length; i < TotalLen; i++) {
buf[i] = compressed[i * 2] * 256 + compressed[i * 2 + 1];
}
var result = [];
buf.forEach(function (c) {
result.push(f(c));
});
return LZString.decompress(result.join(''));
}
},
//compress into a string that is already URI encoded
compressToEncodedURIComponent: function compressToEncodedURIComponent(input) {
if (input == null) return "";
return LZString._compress(input, 6, function (a) {
return keyStrUriSafe.charAt(a);
});
},
//decompress from an output of compressToEncodedURIComponent
decompressFromEncodedURIComponent: function decompressFromEncodedURIComponent(input) {
if (input == null) return "";
if (input == "") return null;
input = input.replace(/ /g, "+");
return LZString._decompress(input.length, 32, function (index) {
return getBaseValue(keyStrUriSafe, input.charAt(index));
});
},
compress: function compress(uncompressed) {
return LZString._compress(uncompressed, 16, function (a) {
return f(a);
});
},
_compress: function _compress(uncompressed, bitsPerChar, getCharFromInt) {
var hasOwnProperty = Object.prototype.hasOwnProperty;
if (uncompressed == null) return "";
var i,
value,
context_dictionary = {},
context_c = "",
context_wc = "",
context_w = "",
context_enlargeIn = 2,
// Compensate for the first entry which should not count
context_dictSize = 3,
context_numBits = 2,
context_data = [],
context_data_val = 0,
context_data_position = 0,
len = uncompressed.length,
nextCreate = false,
create,
ii;
for (ii = 0; ii < len; ii += 1) {
create = nextCreate;
context_c = uncompressed.charAt(ii);
if (!hasOwnProperty.call(context_dictionary, context_c)) {
context_dictionary[context_c] = context_dictSize++;
nextCreate = true;
} else {
nextCreate = false;
}
context_wc = context_w + context_c;
if (hasOwnProperty.call(context_dictionary, context_wc)) {
context_w = context_wc;
} else {
if (create) {
if (context_w.charCodeAt(0) < 256) {
i = context_numBits;
while (i--) {
context_data_val = context_data_val << 1;
if (context_data_position == bitsPerChar - 1) {
context_data_position = 0;
context_data.push(getCharFromInt(context_data_val));
context_data_val = 0;
} else {
context_data_position++;
}
}
value = context_w.charCodeAt(0);
i = 8;
while (i--) {
context_data_val = context_data_val << 1 | value & 1;
if (context_data_position == bitsPerChar - 1) {
context_data_position = 0;
context_data.push(getCharFromInt(context_data_val));
context_data_val = 0;
} else {
context_data_position++;
}
value = value >> 1;
}
} else {
value = 1;
i = context_numBits;
while (i--) {
context_data_val = context_data_val << 1 | value;
if (context_data_position == bitsPerChar - 1) {
context_data_position = 0;
context_data.push(getCharFromInt(context_data_val));
context_data_val = 0;
} else {
context_data_position++;
}
value = 0;
}
value = context_w.charCodeAt(0);
i = 16;
while (i--) {
context_data_val = context_data_val << 1 | value & 1;
if (context_data_position == bitsPerChar - 1) {
context_data_position = 0;
context_data.push(getCharFromInt(context_data_val));
context_data_val = 0;
} else {
context_data_position++;
}
value = value >> 1;
}
}
context_enlargeIn--;
if (context_enlargeIn == 0) {
context_enlargeIn = Math.pow(2, context_numBits);
context_numBits++;
}
} else {
value = context_dictionary[context_w];
i = context_numBits;
while (i--) {
context_data_val = context_data_val << 1 | value & 1;
if (context_data_position == bitsPerChar - 1) {
context_data_position = 0;
context_data.push(getCharFromInt(context_data_val));
context_data_val = 0;
} else {
context_data_position++;
}
value = value >> 1;
}
}
context_enlargeIn--;
if (context_enlargeIn == 0) {
context_enlargeIn = Math.pow(2, context_numBits);
context_numBits++;
}
// Add wc to the dictionary.
context_dictionary[context_wc] = context_dictSize++;
context_w = context_c;
}
}
// Output the code for w.
if (context_w !== "") {
create = nextCreate;
if (create) {
if (context_w.charCodeAt(0) < 256) {
i = context_numBits;
while (i--) {
context_data_val = context_data_val << 1;
if (context_data_position == bitsPerChar - 1) {
context_data_position = 0;
context_data.push(getCharFromInt(context_data_val));
context_data_val = 0;
} else {
context_data_position++;
}
}
value = context_w.charCodeAt(0);
i = 8;
while (i--) {
context_data_val = context_data_val << 1 | value & 1;
if (context_data_position == bitsPerChar - 1) {
context_data_position = 0;
context_data.push(getCharFromInt(context_data_val));
context_data_val = 0;
} else {
context_data_position++;
}
value = value >> 1;
}
} else {
value = 1;
i = context_numBits;
while (i--) {
context_data_val = context_data_val << 1 | value;
if (context_data_position == bitsPerChar - 1) {
context_data_position = 0;
context_data.push(getCharFromInt(context_data_val));
context_data_val = 0;
} else {
context_data_position++;
}
value = 0;
}
value = context_w.charCodeAt(0);
i = 16;
while (i--) {
context_data_val = context_data_val << 1 | value & 1;
if (context_data_position == bitsPerChar - 1) {
context_data_position = 0;
context_data.push(getCharFromInt(context_data_val));
context_data_val = 0;
} else {
context_data_position++;
}
value = value >> 1;
}
}
context_enlargeIn--;
if (context_enlargeIn == 0) {
context_enlargeIn = Math.pow(2, context_numBits);
context_numBits++;
}
} else {
value = context_dictionary[context_w];
i = context_numBits;
while (i--) {
context_data_val = context_data_val << 1 | value & 1;
if (context_data_position == bitsPerChar - 1) {
context_data_position = 0;
context_data.push(getCharFromInt(context_data_val));
context_data_val = 0;
} else {
context_data_position++;
}
value = value >> 1;
}
}
context_enlargeIn--;
if (context_enlargeIn == 0) {
context_enlargeIn = Math.pow(2, context_numBits);
context_numBits++;
}
}
// Mark the end of the stream
value = 2;
i = context_numBits;
while (i--) {
context_data_val = context_data_val << 1 | value & 1;
if (context_data_position == bitsPerChar - 1) {
context_data_position = 0;
context_data.push(getCharFromInt(context_data_val));
context_data_val = 0;
} else {
context_data_position++;
}
value = value >> 1;
}
// Flush the last char
while (true) {
context_data_val = context_data_val << 1;
if (context_data_position == bitsPerChar - 1) {
context_data.push(getCharFromInt(context_data_val));
break;
} else context_data_position++;
}
return context_data.join('');
},
decompress: function decompress(compressed) {
if (compressed == null) return "";
if (compressed == "") return null;
return LZString._decompress(compressed.length, 32768, function (index) {
return compressed.charCodeAt(index);
});
},
_decompress: function _decompress(length, resetValue, getNextValue) {
var dictionary = [],
next,
enlargeIn = 4,
dictSize = 4,
numBits = 3,
entry = "",
result = [],
i,
w,
bits,
resb,
maxpower,
power,
c,
data = { val: getNextValue(0), position: resetValue, index: 1 };
for (i = 0; i < 3; i += 1) {
dictionary[i] = i;
}
bits = 0;
maxpower = Math.pow(2, 2);
power = 1;
while (power != maxpower) {
resb = data.val & data.position;
data.position >>= 1;
if (data.position == 0) {
data.position = resetValue;
data.val = getNextValue(data.index++);
}
bits |= (resb > 0 ? 1 : 0) * power;
power <<= 1;
}
switch (next = bits) {
case 0:
bits = 0;
maxpower = Math.pow(2, 8);
power = 1;
while (power != maxpower) {
resb = data.val & data.position;
data.position >>= 1;
if (data.position == 0) {
data.position = resetValue;
data.val = getNextValue(data.index++);
}
bits |= (resb > 0 ? 1 : 0) * power;
power <<= 1;
}
c = f(bits);
break;
case 1:
bits = 0;
maxpower = Math.pow(2, 16);
power = 1;
while (power != maxpower) {
resb = data.val & data.position;
data.position >>= 1;
if (data.position == 0) {
data.position = resetValue;
data.val = getNextValue(data.index++);
}
bits |= (resb > 0 ? 1 : 0) * power;
power <<= 1;
}
c = f(bits);
break;
case 2:
return "";
}
dictionary[3] = c;
w = c;
result.push(c);
while (true) {
if (data.index > length) {
return "";
}
bits = 0;
maxpower = Math.pow(2, numBits);
power = 1;
while (power != maxpower) {
resb = data.val & data.position;
data.position >>= 1;
if (data.position == 0) {
data.position = resetValue;
data.val = getNextValue(data.index++);
}
bits |= (resb > 0 ? 1 : 0) * power;
power <<= 1;
}
switch (c = bits) {
case 0:
bits = 0;
maxpower = Math.pow(2, 8);
power = 1;
while (power != maxpower) {
resb = data.val & data.position;
data.position >>= 1;
if (data.position == 0) {
data.position = resetValue;
data.val = getNextValue(data.index++);
}
bits |= (resb > 0 ? 1 : 0) * power;
power <<= 1;
}
dictionary[dictSize++] = f(bits);
c = dictSize - 1;
enlargeIn--;
break;
case 1:
bits = 0;
maxpower = Math.pow(2, 16);
power = 1;
while (power != maxpower) {
resb = data.val & data.position;
data.position >>= 1;
if (data.position == 0) {
data.position = resetValue;
data.val = getNextValue(data.index++);
}
bits |= (resb > 0 ? 1 : 0) * power;
power <<= 1;
}
dictionary[dictSize++] = f(bits);
c = dictSize - 1;
enlargeIn--;
break;
case 2:
return result.join('');
}
if (enlargeIn == 0) {
enlargeIn = Math.pow(2, numBits);
numBits++;
}
if (dictionary[c]) {
entry = dictionary[c];
} else {
if (c === dictSize) {
entry = w + w.charAt(0);
} else {
return null;
}
}
result.push(entry);
// Add w+entry[0] to the dictionary.
dictionary[dictSize++] = w + entry.charAt(0);
enlargeIn--;
w = entry;
if (enlargeIn == 0) {
enlargeIn = Math.pow(2, numBits);
numBits++;
}
}
}
};
return LZString;
}();
if (typeof define === 'function' && define.amd) {
define(function () {
return LZString;
});
} else if (typeof module !== 'undefined' && module != null) {
module.exports = LZString;
}