ucsc-xena-client/dist/Application.js

UCSC Xena Client. Functional genomics visualizations.

'use strict';

var _extends = Object.assign || function (target) { for (var i = 1; i < arguments.length; i++) { var source = arguments[i]; for (var key in source) { if (Object.prototype.hasOwnProperty.call(source, key)) { target[key] = source[key]; } } } return target; };

var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }();

var _react = require('react');

var _react2 = _interopRequireDefault(_react);

var _reactMaterialResponsiveGrid = require('react-material-responsive-grid');

var _AppControls = require('./AppControls');

var _KmPlot = require('./KmPlot');

var _StateError = require('./StateError');

var _StateError2 = _interopRequireDefault(_StateError);

var _underscore_ext = require('./underscore_ext');

var _underscore_ext2 = _interopRequireDefault(_underscore_ext);

var _Stepper = require('./views/Stepper');

var _WelcomeContainer = require('./containers/WelcomeContainer');

var _WelcomeContainer2 = _interopRequireDefault(_WelcomeContainer);

require('../css/index.css');

var _reactCssThemr = require('react-css-themr');

var _appTheme = require('./appTheme');

var _appTheme2 = _interopRequireDefault(_appTheme);

var _nav = require('./nav');

var _nav2 = _interopRequireDefault(_nav);

function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; }

function _objectWithoutProperties(obj, keys) { var target = {}; for (var i in obj) { if (keys.indexOf(i) >= 0) continue; if (!Object.prototype.hasOwnProperty.call(obj, i)) continue; target[i] = obj[i]; } return target; }

function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } }

function _possibleConstructorReturn(self, call) { if (!self) { throw new ReferenceError("this hasn't been initialised - super() hasn't been called"); } return call && (typeof call === "object" || typeof call === "function") ? call : self; }

function _inherits(subClass, superClass) { if (typeof superClass !== "function" && superClass !== null) { throw new TypeError("Super expression must either be null or a function, not " + typeof superClass); } subClass.prototype = Object.create(superClass && superClass.prototype, { constructor: { value: subClass, enumerable: false, writable: true, configurable: true } }); if (superClass) Object.setPrototypeOf ? Object.setPrototypeOf(subClass, superClass) : subClass.__proto__ = superClass; } // Root styles file (reset, fonts, globals)


//var Perf = require('react/lib/ReactDefaultPerf');

// should really be in a config file.
var searchHelp = 'http://xena.ghost.io/highlight-filter-help/';

var Application = function (_Component) {
	_inherits(Application, _Component);

	function Application() {
		var _ref;

		var _temp, _this, _ret;

		_classCallCheck(this, Application);

		for (var _len = arguments.length, args = Array(_len), _key = 0; _key < _len; _key++) {
			args[_key] = arguments[_key];
		}

		return _ret = (_temp = (_this = _possibleConstructorReturn(this, (_ref = Application.__proto__ || Object.getPrototypeOf(Application)).call.apply(_ref, [this].concat(args))), _this), _this.onHideError = function () {
			_this.props.callback(['stateError', undefined]);
		}, _temp), _possibleConstructorReturn(_this, _ret);
	}

	_createClass(Application, [{
		key: 'componentDidUpdate',

		//	onPerf = () => {
		//		if (this.perf) {
		//			this.perf = false;
		//			console.log('stop perf');
		//			Perf.stop();
		//			var m = Perf.getLastMeasurements();
		//			console.log('inclusive');
		//			Perf.printInclusive(m);
		//			console.log('exclusive');
		//			Perf.printExclusive(m);
		//			console.log('wasted');
		//			Perf.printWasted(m);
		//		} else {
		//			this.perf = true;
		//			console.log('start perf');
		//			Perf.start();
		//		}
		//	}
		value: function componentDidUpdate() {
			var _props = this.props,
			    getState = _props.getState,
			    onImport = _props.onImport,
			    onNavigate = _props.onNavigate,
			    isPublic = _props.state.isPublic;

			// nested render to different DOM tree

			(0, _nav2.default)({ isPublic: isPublic, getState: getState, onImport: onImport, onNavigate: onNavigate, activeLink: 'heatmap' });
		}
	}, {
		key: 'render',

		//	onSearchIDAndFilterColumn = (qsamplesList) => {
		//		var {state: {samples, cohortSamples}} = this.props,
		//			qsampleListObj = {},
		//			cohortSamplesList = [];
		//
		//		_.map(qsamplesList, (s, i)=>{
		//			qsampleListObj[s] = i + 1;
		//		});
		//		cohortSamplesList = _.flatten(_.map(Object.keys(cohortSamples), i => cohortSamples[i]));
		//
		//		var matches = _.filter(samples, s => qsampleListObj[cohortSamplesList[s]]),
		//			fieldLabel = matches.length + ((matches.length === 1) ? ' match' : ' matches');
		//		this.onFilterColumn(matches, 'sample list', fieldLabel);
		//	};
		value: function render() {
			var _props2 = this.props,
			    state = _props2.state,
			    stateError = _props2.stateError,
			    children = _props2.children,
			    _onShowWelcome = _props2.onShowWelcome,
			    stepperState = _props2.stepperState,
			    loadPending = _props2.loadPending,
			    otherProps = _objectWithoutProperties(_props2, ['state', 'stateError', 'children', 'onShowWelcome', 'stepperState', 'loadPending']),
			    callback = otherProps.callback,
			    wizardMode = state.wizardMode,
			    showWelcome = state.showWelcome,
			    zoom = state.zoom;
			//			onSearchIDAndFilterColumn = this.onSearchIDAndFilterColumn;

			if (loadPending) {
				return _react2.default.createElement(
					'p',
					{ style: { margin: 10 } },
					'Loading your view...'
				);
			}

			return _react2.default.createElement(
				'div',
				null,
				_react2.default.createElement(
					'div',
					{ style: { position: 'relative' } },
					' ',
					showWelcome ? _react2.default.createElement(_WelcomeContainer2.default, { onClick: function onClick() {
							return _onShowWelcome(false);
						} }) : null,
					wizardMode ? _react2.default.createElement(_Stepper.Stepper, { mode: stepperState }) : _react2.default.createElement(_AppControls.AppControls, _extends({}, otherProps, { appState: state, help: searchHelp,
						zoom: zoom, onShowWelcome: function onShowWelcome() {
							return _onShowWelcome(true);
						} })),
					_react2.default.createElement(
						_reactMaterialResponsiveGrid.Grid,
						{ onClick: this.onClick },
						_react2.default.createElement(
							_reactMaterialResponsiveGrid.Row,
							null,
							_react2.default.createElement(
								_reactMaterialResponsiveGrid.Col,
								{ xs4: 4 },
								children
							)
						)
					),
					_underscore_ext2.default.getIn(state, ['km', 'id']) ? _react2.default.createElement(_KmPlot.KmPlot, {
						callback: callback,
						survivalKeys: _underscore_ext2.default.keys(state.survival),
						km: state.km,
						cohort: state.cohort.name }) : null,
					stateError ? _react2.default.createElement(_StateError2.default, { onHide: this.onHideError, error: stateError }) : null
				)
			);
		}
	}]);

	return Application;
}(_react.Component);

var ThemedApplication = function ThemedApplication(props) {
	return _react2.default.createElement(
		_reactCssThemr.ThemeProvider,
		{ theme: _appTheme2.default },
		_react2.default.createElement(Application, props)
	);
};

module.exports = ThemedApplication;