tnt.tree
Version:
TnT tree display
742 lines (731 loc) • 59.1 kB
Plain Text
EnsEMBL (Binary) Tree:
((((Ciona intestinalis:1,Ciona savignyi:1)Ciona:1,(((((((((Sarcophilus harrisii:1,Macropus eugenii:1)Marsupialia:1,Monodelphis domestica:1)Marsupialia:1,((((((((Rattus norvegicus:1,Mus musculus:1)Murinae:1,Dipodomys ordii:1)Sciurognathi:1,Ictidomys tridecemlineatus:1)Sciurognathi:1,Cavia porcellus:1)Rodentia:1,(Oryctolagus cuniculus:1,Ochotona princeps:1)Lagomorpha:1)Glires:1,(((Microcebus murinus:1,Otolemur garnettii:1)Strepsirrhini:1,(((((((Homo sapiens:1,Pan troglodytes:1)Homininae:1,Gorilla gorilla gorilla:1)Homininae:1,Pongo abelii:1)Hominidae:1,Nomascus leucogenys:1)Hominoidea:1,((Macaca mulatta:1,Papio anubis:1)Cercopithecinae:1,Chlorocebus sabaeus:1)Cercopithecinae:1)Catarrhini:1,Callithrix jacchus:1)Simiiformes:1,Tarsius syrichta:1)Haplorrhini:1)Primates:1,Tupaia belangeri:1)Euarchontoglires:1)Euarchontoglires:1,((Sorex araneus:1,Erinaceus europaeus:1)Insectivora:1,(((Myotis lucifugus:1,Pteropus vampyrus:1)Chiroptera:1,((((Mustela putorius furo:1,Ailuropoda melanoleuca:1)Caniformia:1,Canis lupus familiaris:1)Caniformia:1,Felis catus:1)Carnivora:1,Equus caballus:1)Laurasiatheria:1)Laurasiatheria:1,((((Ovis aries:1,Bos taurus:1)Bovidae:1,Tursiops truncatus:1)Cetartiodactyla:1,Vicugna pacos:1)Cetartiodactyla:1,Sus scrofa:1)Cetartiodactyla:1)Laurasiatheria:1)Laurasiatheria:1)Boreoeutheria:1,((Dasypus novemcinctus:1,Choloepus hoffmanni:1)Xenarthra:1,((Loxodonta africana:1,Procavia capensis:1)Afrotheria:1,Echinops telfairi:1)Afrotheria:1)Eutheria:1)Eutheria:1)Theria:1,Ornithorhynchus anatinus:1)Mammalia:1,((((Taeniopygia guttata:1,Ficedula albicollis:1)Passeriformes:1,((Gallus gallus:1,Meleagris gallopavo:1)Phasianidae:1,Anas platyrhynchos:1)Galloanserae:1)Neognathae:1,Pelodiscus sinensis:1)Testudines + Archosauria group:1,Anolis carolinensis:1)Sauria:1)Amniota:1,Xenopus tropicalis:1)Tetrapoda:1,Latimeria chalumnae:1)Sarcopterygii:1,(((Astyanax mexicanus:1,Danio rerio:1)Otophysa:1,((((((Xiphophorus maculatus:1,Poecilia formosa:1)Poeciliinae:1,Oryzias latipes:1)Atherinomorphae:1,Gasterosteus aculeatus:1)Percomorphaceae:1,Oreochromis niloticus:1)Percomorphaceae:1,(Takifugu rubripes:1,Tetraodon nigroviridis:1)Tetraodontidae:1)Percomorphaceae:1,Gadus morhua:1)Acanthomorphata:1)Clupeocephala:1,Lepisosteus oculatus:1)Neopterygii:1)Euteleostomi:1,Petromyzon marinus:1)Vertebrata:1)Chordata:1,(Caenorhabditis elegans:1,Drosophila melanogaster:1)Ecdysozoa:1)Bilateria:1,Saccharomyces cerevisiae:1):0;
Ensembl (Binary) Mammals tree:
((((Sarcophilus harrisii:1,Macropus eugenii:1)Marsupialia:1,Monodelphis domestica:1)Marsupialia:1,((((((((Rattus norvegicus:1,Mus musculus:1)Murinae:1,Dipodomys ordii:1)Sciurognathi:1,Ictidomys tridecemlineatus:1)Sciurognathi:1,Cavia porcellus:1)Rodentia:1,(Oryctolagus cuniculus:1,Ochotona princeps:1)Lagomorpha:1)Glires:1,(((Microcebus murinus:1,Otolemur garnettii:1)Strepsirrhini:1,(((((((Homo sapiens:1,Pan troglodytes:1)Homininae:1,Gorilla gorilla gorilla:1)Homininae:1,Pongo abelii:1)Hominidae:1,Nomascus leucogenys:1)Hominoidea:1,((Macaca mulatta:1,Papio anubis:1)Cercopithecinae:1,Chlorocebus sabaeus:1)Cercopithecinae:1)Catarrhini:1,Callithrix jacchus:1)Simiiformes:1,Tarsius syrichta:1)Haplorrhini:1)Primates:1,Tupaia belangeri:1)Euarchontoglires:1)Euarchontoglires:1,((Sorex araneus:1,Erinaceus europaeus:1)Insectivora:1,(((Myotis lucifugus:1,Pteropus vampyrus:1)Chiroptera:1,((((Mustela putorius furo:1,Ailuropoda melanoleuca:1)Caniformia:1,Canis lupus familiaris:1)Caniformia:1,Felis catus:1)Carnivora:1,Equus caballus:1)Laurasiatheria:1)Laurasiatheria:1,((((Ovis aries:1,Bos taurus:1)Bovidae:1,Tursiops truncatus:1)Cetartiodactyla:1,Vicugna pacos:1)Cetartiodactyla:1,Sus scrofa:1)Cetartiodactyla:1)Laurasiatheria:1)Laurasiatheria:1)Boreoeutheria:1,((Dasypus novemcinctus:1,Choloepus hoffmanni:1)Xenarthra:1,((Loxodonta africana:1,Procavia capensis:1)Afrotheria:1,Echinops telfairi:1)Afrotheria:1)Eutheria:1)Eutheria:1)Theria:1,Ornithorhynchus anatinus:1)Mammalia:1;
Ensembl (Binary) Sauropsids tree:
((((Taeniopygia guttata:1,Ficedula albicollis:1)Passeriformes:1,((Gallus gallus:1,Meleagris gallopavo:1)Phasianidae:1,Anas platyrhynchos:1)Galloanserae:1)Neognathae:1,Pelodiscus sinensis:1)Testudines + Archosauria group:1,Anolis carolinensis:1)Sauria:1;
Ensembl (Binary) Amniota tree:
(((((Sarcophilus harrisii:1,Macropus eugenii:1)Marsupialia:1,Monodelphis domestica:1)Marsupialia:1,((((((((Rattus norvegicus:1,Mus musculus:1)Murinae:1,Dipodomys ordii:1)Sciurognathi:1,Ictidomys tridecemlineatus:1)Sciurognathi:1,Cavia porcellus:1)Rodentia:1,(Oryctolagus cuniculus:1,Ochotona princeps:1)Lagomorpha:1)Glires:1,(((Microcebus murinus:1,Otolemur garnettii:1)Strepsirrhini:1,(((((((Homo sapiens:1,Pan troglodytes:1)Homininae:1,Gorilla gorilla gorilla:1)Homininae:1,Pongo abelii:1)Hominidae:1,Nomascus leucogenys:1)Hominoidea:1,((Macaca mulatta:1,Papio anubis:1)Cercopithecinae:1,Chlorocebus sabaeus:1)Cercopithecinae:1)Catarrhini:1,Callithrix jacchus:1)Simiiformes:1,Tarsius syrichta:1)Haplorrhini:1)Primates:1,Tupaia belangeri:1)Euarchontoglires:1)Euarchontoglires:1,((Sorex araneus:1,Erinaceus europaeus:1)Insectivora:1,(((Myotis lucifugus:1,Pteropus vampyrus:1)Chiroptera:1,((((Mustela putorius furo:1,Ailuropoda melanoleuca:1)Caniformia:1,Canis lupus familiaris:1)Caniformia:1,Felis catus:1)Carnivora:1,Equus caballus:1)Laurasiatheria:1)Laurasiatheria:1,((((Ovis aries:1,Bos taurus:1)Bovidae:1,Tursiops truncatus:1)Cetartiodactyla:1,Vicugna pacos:1)Cetartiodactyla:1,Sus scrofa:1)Cetartiodactyla:1)Laurasiatheria:1)Laurasiatheria:1)Boreoeutheria:1,((Dasypus novemcinctus:1,Choloepus hoffmanni:1)Xenarthra:1,((Loxodonta africana:1,Procavia capensis:1)Afrotheria:1,Echinops telfairi:1)Afrotheria:1)Eutheria:1)Eutheria:1)Theria:1,Ornithorhynchus anatinus:1)Mammalia:1,((((Taeniopygia guttata:1,Ficedula albicollis:1)Passeriformes:1,((Gallus gallus:1,Meleagris gallopavo:1)Phasianidae:1,Anas platyrhynchos:1)Galloanserae:1)Neognathae:1,Pelodiscus sinensis:1)Testudines + Archosauria group:1,Anolis carolinensis:1)Sauria:1)Amniota:1;
Ensembl (Binary) Fish tree:
(((Astyanax mexicanus:1,Danio rerio:1)Otophysa:1,((((((Xiphophorus maculatus:1,Poecilia formosa:1)Poeciliinae:1,Oryzias latipes:1)Atherinomorphae:1,Gasterosteus aculeatus:1)Percomorphaceae:1,Oreochromis niloticus:1)Percomorphaceae:1,(Takifugu rubripes:1,Tetraodon nigroviridis:1)Tetraodontidae:1)Percomorphaceae:1,Gadus morhua:1)Acanthomorphata:1)Clupeocephala:1,Lepisosteus oculatus:1)Neopterygii:1;
NCBI Tree:
(((((((((((((((Microcebus murinus:0.4,Otolemur garnettii:0.4)Strepsirrhini:0.1,((((((Homo sapiens:0.2,Pan troglodytes:0.2,Gorilla gorilla gorilla:0.3)Homininae:0.1,Pongo abelii:0.3)Hominidae:0.1,Nomascus leucogenys:0.3)Hominoidea:0.1,(Macaca mulatta:0.2,Papio anubis:0.2,Chlorocebus sabaeus:0.2)Cercopithecinae:0.3)Catarrhini:0.1,Callithrix jacchus:0.5)Simiiformes:0.1,Tarsius syrichta:0.4)Haplorrhini:0.1)Primates:0.1,((((Rattus norvegicus:0.2,Mus musculus:0.3)Murinae:0.3,Dipodomys ordii:0.4,Ictidomys tridecemlineatus:0.5)Sciurognathi:0.1,Cavia porcellus:0.4)Rodentia:0.1,(Oryctolagus cuniculus:0.3,Ochotona princeps:0.3)Lagomorpha:0.1)Glires:0.1,Tupaia belangeri:0.4)Euarchontoglires:0.1,((Erinaceus europaeus:0.4,Sorex araneus:0.4)Insectivora:0.1,((Ailuropoda melanoleuca:0.3,Canis lupus familiaris:0.4,Mustela putorius furo:0.5)Caniformia:0.1,Felis catus:0.5)Carnivora:0.1,(Myotis lucifugus:0.4,Pteropus vampyrus:0.5)Chiroptera:0.1,((Ovis aries:0.3,Bos taurus:0.3)Bovidae:0.3,Sus scrofa:0.4,Vicugna pacos:0.4,Tursiops truncatus:0.5)Cetartiodactyla:0.1,Equus caballus:0.5)Laurasiatheria:0.1)Boreoeutheria:0.1,(Dasypus novemcinctus:0.4,Choloepus hoffmanni:0.5)Xenarthra:0.1,(Loxodonta africana:0.4,Procavia capensis:0.4,Echinops telfairi:0.4)Afrotheria:0.1)Eutheria:0.1,(Macropus eugenii:0.4,Sarcophilus harrisii:0.4,Monodelphis domestica:0.5)Marsupialia:0.1)Theria:0.1,Ornithorhynchus anatinus:0.5)Mammalia:0.1,((((Ficedula albicollis:0.3,Taeniopygia guttata:0.5)Passeriformes:0.1,((Meleagris gallopavo:0.3,Gallus gallus:0.3)Phasianidae:0.2,Anas platyrhynchos:0.4)Galloanserae:0.1)Neognathae:0.7,Pelodiscus sinensis:0.6)Testudines + Archosauria group:0.1,Anolis carolinensis:1.1)Sauria:0.2)Amniota:0.1,Xenopus tropicalis:0.9)Tetrapoda:0.2,Latimeria chalumnae:0.5)Sarcopterygii:0.1,(((Danio rerio:0.6,Astyanax mexicanus:0.8)Otophysa:0.3,((((Takifugu rubripes:0.2,Tetraodon nigroviridis:0.2)Tetraodontidae:0.4,Gasterosteus aculeatus:0.6)Eupercaria:0.1,(((Poecilia formosa:0.2,Xiphophorus maculatus:0.2)Poeciliinae:0.4,Oryzias latipes:0.6)Atherinomorphae:0.1,Oreochromis niloticus:0.8)Ovalentaria:0.1)Percomorphaceae:0.2,Gadus morhua:0.8)Acanthomorphata:0.5)Clupeocephala:0.3,Lepisosteus oculatus:0.5)Neopterygii:0.3)Euteleostomi:0.3,Petromyzon marinus:0.6)Vertebrata:0.2,(Ciona intestinalis:0.1,Ciona savignyi:0.1)Ciona:0.6)Chordata:0.2,(Caenorhabditis elegans:0.8,Drosophila melanogaster:2.8)Ecdysozoa:0.2)Bilateria:0.3,Saccharomyces cerevisiae:1):0.1;
NCBI Mammals tree:
(((((((Microcebus murinus:0.4,Otolemur garnettii:0.4)Strepsirrhini:0.1,((((((Homo sapiens:0.2,Pan troglodytes:0.2,Gorilla gorilla gorilla:0.3)Homininae:0.1,Pongo abelii:0.3)Hominidae:0.1,Nomascus leucogenys:0.3)Hominoidea:0.1,(Macaca mulatta:0.2,Papio anubis:0.2,Chlorocebus sabaeus:0.2)Cercopithecinae:0.3)Catarrhini:0.1,Callithrix jacchus:0.5)Simiiformes:0.1,Tarsius syrichta:0.4)Haplorrhini:0.1)Primates:0.1,((((Rattus norvegicus:0.2,Mus musculus:0.3)Murinae:0.3,Dipodomys ordii:0.4,Ictidomys tridecemlineatus:0.5)Sciurognathi:0.1,Cavia porcellus:0.4)Rodentia:0.1,(Oryctolagus cuniculus:0.3,Ochotona princeps:0.3)Lagomorpha:0.1)Glires:0.1,Tupaia belangeri:0.4)Euarchontoglires:0.1,((Erinaceus europaeus:0.4,Sorex araneus:0.4)Insectivora:0.1,((Ailuropoda melanoleuca:0.3,Canis lupus familiaris:0.4,Mustela putorius furo:0.5)Caniformia:0.1,Felis catus:0.5)Carnivora:0.1,(Myotis lucifugus:0.4,Pteropus vampyrus:0.5)Chiroptera:0.1,((Ovis aries:0.3,Bos taurus:0.3)Bovidae:0.3,Sus scrofa:0.4,Vicugna pacos:0.4,Tursiops truncatus:0.5)Cetartiodactyla:0.1,Equus caballus:0.5)Laurasiatheria:0.1)Boreoeutheria:0.1,(Dasypus novemcinctus:0.4,Choloepus hoffmanni:0.5)Xenarthra:0.1,(Loxodonta africana:0.4,Procavia capensis:0.4,Echinops telfairi:0.4)Afrotheria:0.1)Eutheria:0.1,(Macropus eugenii:0.4,Sarcophilus harrisii:0.4,Monodelphis domestica:0.5)Marsupialia:0.1)Theria:0.1,Ornithorhynchus anatinus:0.5)Mammalia:0.1;
NCBI Sauria tree:
((((Ficedula albicollis:0.3,Taeniopygia guttata:0.5)Passeriformes:0.1,((Meleagris gallopavo:0.3,Gallus gallus:0.3)Phasianidae:0.2,Anas platyrhynchos:0.4)Galloanserae:0.1)Neognathae:0.7,Pelodiscus sinensis:0.6)Testudines + Archosauria group:0.1,Anolis carolinensis:1.1)Sauria:0.2;
NCBI Amniota tree:
((((((((Microcebus murinus:0.4,Otolemur garnettii:0.4)Strepsirrhini:0.1,((((((Homo sapiens:0.2,Pan troglodytes:0.2,Gorilla gorilla gorilla:0.3)Homininae:0.1,Pongo abelii:0.3)Hominidae:0.1,Nomascus leucogenys:0.3)Hominoidea:0.1,(Macaca mulatta:0.2,Papio anubis:0.2,Chlorocebus sabaeus:0.2)Cercopithecinae:0.3)Catarrhini:0.1,Callithrix jacchus:0.5)Simiiformes:0.1,Tarsius syrichta:0.4)Haplorrhini:0.1)Primates:0.1,((((Rattus norvegicus:0.2,Mus musculus:0.3)Murinae:0.3,Dipodomys ordii:0.4,Ictidomys tridecemlineatus:0.5)Sciurognathi:0.1,Cavia porcellus:0.4)Rodentia:0.1,(Oryctolagus cuniculus:0.3,Ochotona princeps:0.3)Lagomorpha:0.1)Glires:0.1,Tupaia belangeri:0.4)Euarchontoglires:0.1,((Erinaceus europaeus:0.4,Sorex araneus:0.4)Insectivora:0.1,((Ailuropoda melanoleuca:0.3,Canis lupus familiaris:0.4,Mustela putorius furo:0.5)Caniformia:0.1,Felis catus:0.5)Carnivora:0.1,(Myotis lucifugus:0.4,Pteropus vampyrus:0.5)Chiroptera:0.1,((Ovis aries:0.3,Bos taurus:0.3)Bovidae:0.3,Sus scrofa:0.4,Vicugna pacos:0.4,Tursiops truncatus:0.5)Cetartiodactyla:0.1,Equus caballus:0.5)Laurasiatheria:0.1)Boreoeutheria:0.1,(Dasypus novemcinctus:0.4,Choloepus hoffmanni:0.5)Xenarthra:0.1,(Loxodonta africana:0.4,Procavia capensis:0.4,Echinops telfairi:0.4)Afrotheria:0.1)Eutheria:0.1,(Macropus eugenii:0.4,Sarcophilus harrisii:0.4,Monodelphis domestica:0.5)Marsupialia:0.1)Theria:0.1,Ornithorhynchus anatinus:0.5)Mammalia:0.1,((((Ficedula albicollis:0.3,Taeniopygia guttata:0.5)Passeriformes:0.1,((Meleagris gallopavo:0.3,Gallus gallus:0.3)Phasianidae:0.2,Anas platyrhynchos:0.4)Galloanserae:0.1)Neognathae:0.7,Pelodiscus sinensis:0.6)Testudines + Archosauria group:0.1,Anolis carolinensis:1.1)Sauria:0.2)Amniota:0.1;
NCBI Fish tree:
(((Danio rerio:0.6,Astyanax mexicanus:0.8)Otophysa:0.3,((((Takifugu rubripes:0.2,Tetraodon nigroviridis:0.2)Tetraodontidae:0.4,Gasterosteus aculeatus:0.6)Eupercaria:0.1,(((Poecilia formosa:0.2,Xiphophorus maculatus:0.2)Poeciliinae:0.4,Oryzias latipes:0.6)Atherinomorphae:0.1,Oreochromis niloticus:0.8)Ovalentaria:0.1)Percomorphaceae:0.2,Gadus morhua:0.8)Acanthomorphata:0.5)Clupeocephala:0.3,Lepisosteus oculatus:0.5)Neopterygii:0.3;
$VAR1 = {
'Cercopithecinae' => {
'name' => undef,
'taxon_id' => '9528',
'ensembl_name' => 'Old World monkeys',
'timetree' => '11.1'
},
'Petromyzon marinus' => {
'production_name' => 'petromyzon_marinus',
'name' => 'sea lamprey',
'taxon_id' => '7757',
'ensembl_name' => 'Lamprey',
'timetree' => undef,
'assembly' => 'Pmarinus_7.0'
},
'Sarcophilus harrisii' => {
'production_name' => 'sarcophilus_harrisii',
'name' => 'Tasmanian devil',
'taxon_id' => '9305',
'ensembl_name' => 'Tasmanian devil',
'timetree' => undef,
'assembly' => 'DEVIL7.0'
},
'Rodentia' => {
'name' => undef,
'taxon_id' => '9989',
'ensembl_name' => 'Rodents',
'timetree' => '77.9'
},
'Theria' => {
'name' => undef,
'taxon_id' => '32525',
'ensembl_name' => 'Marsupials and Placental mammals',
'timetree' => '162.6'
},
'Ochotona princeps' => {
'production_name' => 'ochotona_princeps',
'name' => 'American pika',
'taxon_id' => '9978',
'ensembl_name' => 'Pika',
'timetree' => undef,
'assembly' => 'pika'
},
'Ficedula albicollis' => {
'production_name' => 'ficedula_albicollis',
'name' => 'collared flycatcher',
'taxon_id' => '59894',
'ensembl_name' => 'Flycatcher',
'timetree' => undef,
'assembly' => 'FicAlb_1.4'
},
'Simiiformes' => {
'name' => undef,
'taxon_id' => '314293',
'ensembl_name' => 'Simians',
'timetree' => '42.6'
},
'Astyanax mexicanus' => {
'production_name' => 'astyanax_mexicanus',
'name' => 'Mexican tetra',
'taxon_id' => '7994',
'ensembl_name' => 'Cave fish',
'timetree' => undef,
'assembly' => 'AstMex102'
},
'Vertebrata' => {
'name' => undef,
'taxon_id' => '7742',
'ensembl_name' => 'Vertebrates',
'timetree' => '535.7'
},
'Bilateria' => {
'name' => undef,
'taxon_id' => '33213',
'ensembl_name' => 'Bilateral animals',
'timetree' => '937.5'
},
'Testudines + Archosauria group' => {
'name' => undef,
'taxon_id' => '1329799',
'ensembl_name' => 'Birds and turtles',
'timetree' => '244.2'
},
'Oryctolagus cuniculus' => {
'production_name' => 'oryctolagus_cuniculus',
'name' => 'rabbit',
'taxon_id' => '9986',
'ensembl_name' => 'Rabbit',
'timetree' => undef,
'assembly' => 'OryCun2.0'
},
'Callithrix jacchus' => {
'production_name' => 'callithrix_jacchus',
'name' => 'white-tufted-ear marmoset',
'taxon_id' => '9483',
'ensembl_name' => 'Marmoset',
'timetree' => undef,
'assembly' => 'C_jacchus3.2.1'
},
'Mustela putorius furo' => {
'production_name' => 'mustela_putorius_furo',
'name' => undef,
'taxon_id' => '9669',
'ensembl_name' => 'Ferret',
'timetree' => undef,
'assembly' => 'MusPutFur1.0'
},
'Microcebus murinus' => {
'production_name' => 'microcebus_murinus',
'name' => 'gray mouse lemur',
'taxon_id' => '30608',
'ensembl_name' => 'Mouse Lemur',
'timetree' => undef,
'assembly' => 'micMur1'
},
'Gallus gallus' => {
'production_name' => 'gallus_gallus',
'name' => 'chicken',
'taxon_id' => '9031',
'ensembl_name' => 'Chicken',
'timetree' => undef,
'assembly' => 'Galgal4'
},
'Ovis aries' => {
'production_name' => 'ovis_aries',
'name' => 'sheep',
'taxon_id' => '9940',
'ensembl_name' => 'Sheep',
'timetree' => undef,
'assembly' => 'Oar_v3.1'
},
'Caenorhabditis elegans' => {
'production_name' => 'caenorhabditis_elegans',
'name' => undef,
'taxon_id' => '6239',
'ensembl_name' => 'C.elegans',
'timetree' => undef,
'assembly' => 'WBcel235'
},
'Opisthokonta' => {
'name' => undef,
'taxon_id' => '33154',
'ensembl_name' => 'Animals and Fungi',
'timetree' => '1215.8'
},
'Ecdysozoa' => {
'name' => undef,
'taxon_id' => '1206794',
'ensembl_name' => 'Arthropods and nematodes',
'timetree' => '936.5'
},
'Macropus eugenii' => {
'production_name' => 'macropus_eugenii',
'name' => 'tammar wallaby',
'taxon_id' => '9315',
'ensembl_name' => 'Wallaby',
'timetree' => undef,
'assembly' => 'Meug_1.0'
},
'Neopterygii' => {
'name' => undef,
'taxon_id' => '41665',
'ensembl_name' => 'Ray-finned fishes',
'timetree' => '333.8'
},
'Strepsirrhini' => {
'name' => undef,
'taxon_id' => '376911',
'ensembl_name' => 'Wet nose lemurs',
'timetree' => '57.9'
},
'Amniota' => {
'name' => undef,
'taxon_id' => '32524',
'ensembl_name' => 'Amniotes',
'timetree' => '296.0'
},
'Ovalentaria' => {
'name' => undef,
'taxon_id' => '1489908',
'ensembl_name' => 'Teleost fishes',
'timetree' => '103.8'
},
'Canis lupus familiaris' => {
'production_name' => 'canis_familiaris',
'name' => undef,
'taxon_id' => '9615',
'ensembl_name' => 'Dog',
'timetree' => undef,
'assembly' => 'CanFam3.1'
},
'Murinae' => {
'name' => undef,
'taxon_id' => '39107',
'ensembl_name' => 'Old World rodents',
'timetree' => '25.4'
},
'Catarrhini' => {
'name' => undef,
'taxon_id' => '9526',
'ensembl_name' => 'Apes and Old World monkeys',
'timetree' => '29.0'
},
'Lepisosteus oculatus' => {
'production_name' => 'lepisosteus_oculatus',
'name' => 'spotted gar',
'taxon_id' => '7918',
'ensembl_name' => 'Spotted gar',
'timetree' => undef,
'assembly' => 'LepOcu1'
},
'Poecilia formosa' => {
'production_name' => 'poecilia_formosa',
'name' => 'Amazon molly',
'taxon_id' => '48698',
'ensembl_name' => 'Amazon molly',
'timetree' => undef,
'assembly' => 'PoeFor_5.1.2'
},
'Rattus norvegicus' => {
'production_name' => 'rattus_norvegicus',
'name' => 'Norway rat',
'taxon_id' => '10116',
'ensembl_name' => 'Rat',
'timetree' => undef,
'assembly' => 'Rnor_5.0'
},
'Gasterosteus aculeatus' => {
'production_name' => 'gasterosteus_aculeatus',
'name' => 'three-spined stickleback',
'taxon_id' => '69293',
'ensembl_name' => 'Stickleback',
'timetree' => undef,
'assembly' => 'BROADS1'
},
'Carnivora' => {
'name' => undef,
'taxon_id' => '33554',
'ensembl_name' => 'Carnivores',
'timetree' => '55.1'
},
'Galloanserae' => {
'name' => undef,
'taxon_id' => '1549675',
'ensembl_name' => undef,
'timetree' => undef
},
'Choloepus hoffmanni' => {
'production_name' => 'choloepus_hoffmanni',
'name' => 'Hoffmann\'s two-fingered sloth',
'taxon_id' => '9358',
'ensembl_name' => 'Sloth',
'timetree' => undef,
'assembly' => 'choHof1'
},
'Mus musculus' => {
'production_name' => 'mus_musculus',
'name' => 'house mouse',
'taxon_id' => '10090',
'ensembl_name' => 'Mouse',
'timetree' => undef,
'assembly' => 'GRCm38'
},
'Ictidomys tridecemlineatus' => {
'production_name' => 'ictidomys_tridecemlineatus',
'name' => 'thirteen-lined ground squirrel',
'taxon_id' => '43179',
'ensembl_name' => 'Squirrel',
'timetree' => undef,
'assembly' => 'spetri2'
},
'Gorilla gorilla gorilla' => {
'production_name' => 'gorilla_gorilla',
'name' => undef,
'taxon_id' => '9595',
'ensembl_name' => 'Gorilla',
'timetree' => undef,
'assembly' => 'gorGor3.1'
},
'Bovidae' => {
'name' => undef,
'taxon_id' => '9895',
'ensembl_name' => 'Bovids',
'timetree' => '30.1'
},
'Gadus morhua' => {
'production_name' => 'gadus_morhua',
'name' => 'Atlantic cod',
'taxon_id' => '8049',
'ensembl_name' => 'Cod',
'timetree' => undef,
'assembly' => 'gadMor1'
},
'Sarcopterygii' => {
'name' => undef,
'taxon_id' => '8287',
'ensembl_name' => 'Lobe-finned fish',
'timetree' => '414.9'
},
'Chordata' => {
'name' => undef,
'taxon_id' => '7711',
'ensembl_name' => 'Chordates',
'timetree' => '722.5'
},
'Xenopus tropicalis' => {
'production_name' => 'xenopus_tropicalis',
'name' => 'western clawed frog',
'taxon_id' => '8364',
'ensembl_name' => 'X.tropicalis',
'timetree' => undef,
'assembly' => 'JGI_4.2'
},
'Acanthomorphata' => {
'name' => undef,
'taxon_id' => '123368',
'ensembl_name' => 'Teleost fishes',
'timetree' => '165.0'
},
'Marsupialia' => {
'name' => undef,
'taxon_id' => '9263',
'ensembl_name' => 'Marsupials',
'timetree' => '86.4'
},
'Taeniopygia guttata' => {
'production_name' => 'taeniopygia_guttata',
'name' => 'zebra finch',
'taxon_id' => '59729',
'ensembl_name' => 'Zebra Finch',
'timetree' => undef,
'assembly' => 'taeGut3.2.4'
},
'Felis catus' => {
'production_name' => 'felis_catus',
'name' => 'domestic cat',
'taxon_id' => '9685',
'ensembl_name' => 'Cat',
'timetree' => undef,
'assembly' => 'Felis_catus_6.2'
},
'Tetraodon nigroviridis' => {
'production_name' => 'tetraodon_nigroviridis',
'name' => 'spotted green pufferfish',
'taxon_id' => '99883',
'ensembl_name' => 'Tetraodon',
'timetree' => undef,
'assembly' => 'TETRAODON8'
},
'Ciona savignyi' => {
'production_name' => 'ciona_savignyi',
'name' => 'Pacific transparent sea squirt',
'taxon_id' => '51511',
'ensembl_name' => 'C.savignyi',
'timetree' => undef,
'assembly' => 'CSAV2.0'
},
'Latimeria chalumnae' => {
'production_name' => 'latimeria_chalumnae',
'name' => 'coelacanth',
'taxon_id' => '7897',
'ensembl_name' => 'Coelacanth',
'timetree' => undef,
'assembly' => 'LatCha1'
},
'Procavia capensis' => {
'production_name' => 'procavia_capensis',
'name' => 'Cape rock hyrax',
'taxon_id' => '9813',
'ensembl_name' => 'Hyrax',
'timetree' => undef,
'assembly' => 'proCap1'
},
'Eupercaria' => {
'name' => undef,
'taxon_id' => '1489922',
'ensembl_name' => 'Teleost fishes',
'timetree' => '125.0'
},
'Loxodonta africana' => {
'production_name' => 'loxodonta_africana',
'name' => 'African savanna elephant',
'taxon_id' => '9785',
'ensembl_name' => 'Elephant',
'timetree' => undef,
'assembly' => 'loxAfr3'
},
'Xiphophorus maculatus' => {
'production_name' => 'xiphophorus_maculatus',
'name' => 'southern platyfish',
'taxon_id' => '8083',
'ensembl_name' => 'Platyfish',
'timetree' => undef,
'assembly' => 'Xipmac4.4.2'
},
'Dipodomys ordii' => {
'production_name' => 'dipodomys_ordii',
'name' => 'Ord\'s kangaroo rat',
'taxon_id' => '10020',
'ensembl_name' => 'Kangaroo rat',
'timetree' => undef,
'assembly' => 'dipOrd1'
},
'Sciurognathi' => {
'name' => undef,
'taxon_id' => '33553',
'ensembl_name' => 'Squirrels and Old World rodents',
'timetree' => '78.7'
},
'Nomascus leucogenys' => {
'production_name' => 'nomascus_leucogenys',
'name' => 'northern white-cheeked gibbon',
'taxon_id' => '61853',
'ensembl_name' => 'Gibbon',
'timetree' => undef,
'assembly' => 'Nleu1.0'
},
'Equus caballus' => {
'production_name' => 'equus_caballus',
'name' => 'horse',
'taxon_id' => '9796',
'ensembl_name' => 'Horse',
'timetree' => undef,
'assembly' => 'EquCab2'
},
'Boreoeutheria' => {
'name' => undef,
'taxon_id' => '1437010',
'ensembl_name' => undef,
'timetree' => undef
},
'Ciona' => {
'name' => undef,
'taxon_id' => '7718',
'ensembl_name' => 'Ciona sea squirts',
'timetree' => '100'
},
'Meleagris gallopavo' => {
'production_name' => 'meleagris_gallopavo',
'name' => 'turkey',
'taxon_id' => '9103',
'ensembl_name' => 'Turkey',
'timetree' => undef,
'assembly' => 'UMD2'
},
'Erinaceus europaeus' => {
'production_name' => 'erinaceus_europaeus',
'name' => 'western European hedgehog',
'taxon_id' => '9365',
'ensembl_name' => 'Hedgehog',
'timetree' => undef,
'assembly' => 'HEDGEHOG'
},
'Anas platyrhynchos' => {
'production_name' => 'anas_platyrhynchos',
'name' => 'mallard',
'taxon_id' => '8839',
'ensembl_name' => 'Duck',
'timetree' => undef,
'assembly' => 'BGI_duck_1.0'
},
'Afrotheria' => {
'name' => undef,
'taxon_id' => '311790',
'ensembl_name' => 'African mammals',
'timetree' => '81.8'
},
'Papio anubis' => {
'production_name' => 'papio_anubis',
'name' => 'olive baboon',
'taxon_id' => '9555',
'ensembl_name' => 'Olive baboon',
'timetree' => undef,
'assembly' => 'PapAnu2.0'
},
'Haplorrhini' => {
'name' => undef,
'taxon_id' => '376913',
'ensembl_name' => 'Dry-nosed primates',
'timetree' => '65.2'
},
'Mammalia' => {
'name' => undef,
'taxon_id' => '40674',
'ensembl_name' => 'Mammals',
'timetree' => '167.4'
},
'Sauria' => {
'name' => undef,
'taxon_id' => '32561',
'ensembl_name' => 'Reptiles and birds',
'timetree' => '276.0'
},
'Otolemur garnettii' => {
'production_name' => 'otolemur_garnettii',
'name' => 'small-eared galago',
'taxon_id' => '30611',
'ensembl_name' => 'Bushbaby',
'timetree' => undef,
'assembly' => 'OtoGar3'
},
'Saccharomyces cerevisiae' => {
'production_name' => 'saccharomyces_cerevisiae',
'name' => 'baker\'s yeast',
'taxon_id' => '4932',
'ensembl_name' => 'S.cerevisiae',
'timetree' => undef,
'assembly' => 'R64-1-1'
},
'Homo sapiens' => {
'production_name' => 'homo_sapiens',
'name' => 'human',
'taxon_id' => '9606',
'ensembl_name' => 'Human',
'timetree' => undef,
'assembly' => 'GRCh38'
},
'Homininae' => {
'name' => undef,
'taxon_id' => '207598',
'ensembl_name' => 'Hominines',
'timetree' => '8.8'
},
'Tetrapoda' => {
'name' => undef,
'taxon_id' => '32523',
'ensembl_name' => 'Tetrapods',
'timetree' => '371.2'
},
'Oryzias latipes' => {
'production_name' => 'oryzias_latipes',
'name' => 'Japanese medaka',
'taxon_id' => '8090',
'ensembl_name' => 'Medaka',
'timetree' => undef,
'assembly' => 'MEDAKA1'
},
'Hominidae' => {
'name' => undef,
'taxon_id' => '9604',
'ensembl_name' => 'Great apes',
'timetree' => '15.7'
},
'Echinops telfairi' => {
'production_name' => 'echinops_telfairi',
'name' => 'small Madagascar hedgehog',
'taxon_id' => '9371',
'ensembl_name' => 'Tenrec',
'timetree' => undef,
'assembly' => 'TENREC'
},
'Ornithorhynchus anatinus' => {
'production_name' => 'ornithorhynchus_anatinus',
'name' => 'platypus',
'taxon_id' => '9258',
'ensembl_name' => 'Platypus',
'timetree' => undef,
'assembly' => 'OANA5'
},
'Cetartiodactyla' => {
'name' => undef,
'taxon_id' => '91561',
'ensembl_name' => 'Cetaceans and Even-toed ungulates',
'timetree' => '63.4'
},
'Sorex araneus' => {
'production_name' => 'sorex_araneus',
'name' => 'European shrew',
'taxon_id' => '42254',
'ensembl_name' => 'Shrew',
'timetree' => undef,
'assembly' => 'COMMON_SHREW1'
},
'Chiroptera' => {
'name' => undef,
'taxon_id' => '9397',
'ensembl_name' => 'Bats',
'timetree' => '60.0'
},
'Ailuropoda melanoleuca' => {
'production_name' => 'ailuropoda_melanoleuca',
'name' => 'giant panda',
'taxon_id' => '9646',
'ensembl_name' => 'Panda',
'timetree' => undef,
'assembly' => 'ailMel1'
},
'Passeriformes' => {
'name' => undef,
'taxon_id' => '9126',
'ensembl_name' => 'Perching birds',
'timetree' => '39.2'
},
'Phasianidae' => {
'name' => undef,
'taxon_id' => '9005',
'ensembl_name' => 'Turkeys',
'timetree' => '44.6'
},
'Primates' => {
'name' => undef,
'taxon_id' => '9443',
'ensembl_name' => 'Primates',
'timetree' => '74.0'
},
'Danio rerio' => {
'production_name' => 'danio_rerio',
'name' => 'zebrafish',
'taxon_id' => '7955',
'ensembl_name' => 'Zebrafish',
'timetree' => undef,
'assembly' => 'Zv9'
},
'Laurasiatheria' => {
'name' => undef,
'taxon_id' => '314145',
'ensembl_name' => 'Laurasiatherian mammals',
'timetree' => '91.7'
},
'Drosophila melanogaster' => {
'production_name' => 'drosophila_melanogaster',
'name' => 'fruit fly',
'taxon_id' => '7227',
'ensembl_name' => 'Fruitfly',
'timetree' => undef,
'assembly' => 'BDGP5'
},
'Tursiops truncatus' => {
'production_name' => 'tursiops_truncatus',
'name' => 'bottlenosed dolphin',
'taxon_id' => '9739',
'ensembl_name' => 'Dolphin',
'timetree' => undef,
'assembly' => 'turTru1'
},
'Eutheria' => {
'name' => undef,
'taxon_id' => '9347',
'ensembl_name' => 'Placental mammals',
'timetree' => '104.2'
},
'Sus scrofa' => {
'production_name' => 'sus_scrofa',
'name' => 'pig',
'taxon_id' => '9823',
'ensembl_name' => 'Pig',
'timetree' => undef,
'assembly' => 'Sscrofa10.2'
},
'Oreochromis niloticus' => {
'production_name' => 'oreochromis_niloticus',
'name' => 'Nile tilapia',
'taxon_id' => '8128',
'ensembl_name' => 'Tilapia',
'timetree' => undef,
'assembly' => 'Orenil1.0'
},
'Xenarthra' => {
'name' => undef,
'taxon_id' => '9348',
'ensembl_name' => 'Xenarthran mammals',
'timetree' => '64.50'
},
'Hominoidea' => {
'name' => undef,
'taxon_id' => '314295',
'ensembl_name' => 'Apes',
'timetree' => '20.4'
},
'Myotis lucifugus' => {
'production_name' => 'myotis_lucifugus',
'name' => 'little brown bat',
'taxon_id' => '59463',
'ensembl_name' => 'Microbat',
'timetree' => undef,
'assembly' => 'Myoluc2.0'
},
'Euteleostomi' => {
'name' => undef,
'taxon_id' => '117571',
'ensembl_name' => 'Bony vertebrates',
'timetree' => '400.1'
},
'Bos taurus' => {
'production_name' => 'bos_taurus',
'name' => 'cattle',
'taxon_id' => '9913',
'ensembl_name' => 'Cow',
'timetree' => undef,
'assembly' => 'UMD3.1'
},
'Otophysa' => {
'name' => undef,
'taxon_id' => '186626',
'ensembl_name' => 'Teleost fishes',
'timetree' => '152.9'
},
'Pelodiscus sinensis' => {
'production_name' => 'pelodiscus_sinensis',
'name' => 'Chinese soft-shelled turtle',
'taxon_id' => '13735',
'ensembl_name' => 'Chinese softshell turtle',
'timetree' => undef,
'assembly' => 'PelSin_1.0'
},
'Clupeocephala' => {
'name' => undef,
'taxon_id' => '186625',
'ensembl_name' => 'Teleost fishes',
'timetree' => '265.5'
}