taxonium-component/dist/RefNameAliasAdapter-Bqvy0Huc.js

React component for exploring large phylogenetic trees in the browser

import { B as f } from "./index-CpJXUZUB.js";
import { a1 as p } from "./JBrowsePanel-BNE3gNW1.js";
class N extends f.BaseAdapter {
  async getRefNameAliases() {
    const t = this.getConf("location");
    if (t.uri === "" || t.uri === "/path/to/my/aliases.txt")
      return [];
    const o = await p.openLocation(t, this.pluginManager).readFile("utf8"), n = this.getConf("refNameColumn"), a = this.getConf("refNameColumnHeaderName"), s = o.trim().split(/\n|\r\n|\r/).filter((e) => !!e), r = s.filter((e) => e.startsWith("#")), l = a && r.length ? r.at(-1).slice(1).split("	").map((e) => e.trim()).indexOf(a) : n;
    return s.filter((e) => !e.startsWith("#")).map((e) => {
      const i = e.split("	");
      return {
        refName: i[l],
        aliases: i.filter((m) => !!m.trim())
      };
    });
  }
}
export {
  N as default
};
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