taxonium-component/dist/NcbiSequenceReportAliasAdapter-BduRx2iC.js

React component for exploring large phylogenetic trees in the browser

import { B as d } from "./index-CpJXUZUB.js";
import { a1 as m } from "./JBrowsePanel-BNE3gNW1.js";
class x extends d.BaseAdapter {
  async getRefNameAliases() {
    const n = this.getConf("location");
    if (n.uri === "" || n.uri === "/path/to/my/sequence_report.tsv")
      return [];
    const c = this.getConf("useNameOverride"), r = (await m.openLocation(n, this.pluginManager).readFile("utf8")).split(/\n|\r\n|\r/).filter((e) => !!e.trim()).map((e) => e.split("	")), s = r[0] || [], i = s.indexOf("GenBank seq accession"), o = s.indexOf("RefSeq seq accession"), t = s.indexOf("UCSC style name"), a = s.indexOf("Sequence name");
    if (i === -1 || o === -1 || t === -1)
      throw new Error('Header line must include "GenBank seq accession", "RefSeq seq accession", "UCSC style name", and "Sequence name"');
    return r.slice(1).filter((e) => !!e[t] || !!e[a]).map((e) => ({
      refName: e[t] || e[a],
      aliases: [
        e[i],
        e[o],
        e[t],
        e[a]
      ].filter((f) => !!f),
      override: c
    })).filter((e) => !!e.refName);
  }
}
export {
  x as default
};
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