taxonium-component/dist/getMaximumModificationAtEachPosition-WpooMLNB.js

React component for exploring large phylogenetic trees in the browser

import { ae as M, af as m, ag as x, ah as h, ai as y } from "./JBrowsePanel-uJIA-L6s.js";
function q(o, g) {
  const r = o.get("strand"), l = o.get("seq"), p = M(o, "MM", "Mm") || "", f = g || m(o.get("CIGAR"));
  if (l) {
    const P = x(p, l, r), a = h(o), t = [];
    let b = 0;
    for (const { type: c, positions: e } of P) {
      for (const { ref: n, idx: d } of y(f, e)) {
        const s = (a == null ? void 0 : a[b + (r === -1 ? e.length - 1 - d : d)]) || 0;
        if (!t[n])
          t[n] = {
            type: c,
            prob: s,
            allProbs: [s]
          };
        else {
          const i = t[n];
          t[n] = {
            allProbs: [...i.allProbs, s],
            prob: Math.max(i.prob, s),
            type: i.prob > s ? i.type : c
          };
        }
      }
      b += e.length;
    }
    return t;
  }
}
export {
  q as g
};
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