taxonium-component/dist/NcbiSequenceReportAliasAdapter-Bol-oDew.js

React component for exploring large phylogenetic trees in the browser

import { B as d } from "./index-B1f8CF_V.js";
import { a4 as l } from "./JBrowsePanel-ClL6pWQW.js";
class q extends d.BaseAdapter {
  async getRefNameAliases() {
    const n = this.getConf("location");
    if (n.uri === "" || n.uri === "/path/to/my/sequence_report.tsv")
      return [];
    const c = this.getConf("useUcscNameOverride"), a = (await l.openLocation(n, this.pluginManager).readFile("utf8")).split(/\n|\r\n|\r/).filter((e) => !!e.trim()).map((e) => e.split("	")), t = a[0] || [], r = t.indexOf("GenBank seq accession"), o = t.indexOf("RefSeq seq accession"), s = t.indexOf("UCSC style name"), i = t.indexOf("Sequence name");
    if (r === -1 || o === -1 || s === -1)
      throw new Error('Header line must include "GenBank seq accession", "RefSeq seq accession", "UCSC style name", and "Sequence name"');
    return a.slice(1).filter((e) => !!e[s] || !!e[i]).map((e) => ({
      refName: e[s] || e[i],
      aliases: [e[r], e[o], e[s], e[i]].filter((f) => !!f),
      override: c
    })).filter((e) => !!e.refName);
  }
}
export {
  q as default
};
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