ssm-plague-uk-1665-data/package.json

Death data in London and Eyam from the 1665 plague epidemic, extracted from Welford and Bossak 2009, Validation of Inverse Seasonal Peak Mortality in Medieval Plagues, Including the Black Death, in Comparison to Modern Yersinia pestis-Variant Diseases.

{
  "name": "ssm-plague-uk-1665-data",
  "version": "0.0.0",
  "description": 
     "Death data in London and Eyam from the 1665 plague epidemic, extracted from Welford and Bossak 2009, Validation of Inverse Seasonal Peak Mortality in Medieval Plagues, Including the Black Death, in Comparison to Modern Yersinia pestis-Variant Diseases.",
  "repository": {
    "type": "git",
    "url": "git://github.com/JDureau/ssm-plague-uk-1665-data.git"
  },
  "files": [
    "data/data.csv"
  ],
  "keywords": [
    "SSM",
    "Plague",
    "London",
    "Eyam",
    "data"
  ],
  "author": {
    "name": "Joseph Dureau"
  },
  "license": "MIT",
  "bugs": {
    "url": "https://github.com/JDureau/ssm-plague-uk-1665-data/issues"
  },
  "homepage": "https://github.com/JDureau/ssm-plague-uk-1665-data",
  "resources": [
    {
      "name": "data",
      "path": "data/data.csv",
      "format": "csv",
      "schema": {
        "fields": [
          {
            "name": "date",
            "type": "date"
          },
          {
            "name": "london_observed_deaths",
            "type": "number"
          },
	  {
            "name": "eyam_observed_deaths",
            "type": "number"
          }
        ]
      }
    },

    {
      "name": "pr_S_london",
      "description": "Proportion of initially susceptibles in London",
      "data": {
        "distribution": "uniform", 
        "lower":0.97,
	"upper":1
      }
    },
    {
      "name": "pr_S_eyam",
      "description": "Proportion of initially susceptibles in eyam",
      "data": {
        "distribution": "uniform", 
        "lower":0.97,
	"upper":1
      }
    },
    {
      "name": "N_london",
      "description": "Initial population size in London",
      "data": {
        "distribution": "fixed", 
        "value":460000
      }
    },
    {
      "name": "N_eyam",
      "description": "Initial population size in Eyam",
      "data": {
        "distribution": "fixed", 
        "value":350
      }
    },
    {
      "name": "e",
      "description": "Seasonal forcing amplitude",
      "data": {
        "distribution": "uniform", 
        "lower":0,
	"upper":1
      }
    },
    {
      "name": "d",
      "description": "Seasonal forcing phase",
      "data": {
        "distribution": "uniform", 
        "lower":-1,
	"upper":1
      }
    },
    {
      "name": "r0_london",
      "description": "Plague reproduction rate in London",
      "data": {
        "distribution": "uniform", 
        "lower":0,
	"upper":15
      }
    },
    {
      "name": "r0_eyam",
      "description": "Plague reproduction rate in eyam",
      "data": {
        "distribution": "uniform", 
        "lower":0,
	"upper":15
      }
    },
    {
      "name": "life_exp",
      "description": "Life expectancy with Plague",
      "data": {
        "distribution": "uniform", 
        "lower":1,
	"upper":7
      }
    },
    {
      "name": "rep_london",
      "description": "Reporting rate in London",
      "data": {
        "distribution": "uniform", 
        "lower":0.5,
	"upper":1
      }
    },
    {
      "name": "rep_eyam",
      "description": "Reporting rate in Eyam",
      "data": {
        "distribution": "uniform", 
        "lower":0.5,
	"upper":1
      }
    },
    {
      "name": "phi",
      "description": "over-dispersion",
      "data": {
	"distribution": "fixed", 
        "value":0.2
      }
    }
  ]
}