slv-utils
Version:
Utilities for working with SLV and DAT files.
1,822 lines • 315 kB
JSON
{
"sourceFormat": "SLV",
"content": {
"header": "DBSolve Optimum (new parser) 1 Jul 2006\nSLV25.00*",
"map": [
{
"key": "Number of rows in matrix (Number of activities) ",
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"4 "
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"type": "number",
"value": 4
}
]
},
{
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],
"parsedValue": [
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"type": "number",
"value": 4
}
]
},
{
"key": "Initial System dimension ",
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"parsedValue": [
{
"type": "number",
"value": 3
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},
{
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{
"type": "number",
"value": 3
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]
},
{
"key": "Maximum Value of the Selected Variable ",
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],
"parsedValue": [
{
"type": "number",
"value": 10
}
]
},
{
"key": "Minimum Value of the Selected Variable ",
"rawValue": [
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"parsedValue": [
{
"type": "number",
"value": 1
}
]
},
{
"key": "Initial Step ",
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],
"parsedValue": [
{
"type": "number",
"value": 0.001
}
]
},
{
"key": "Method Accuracy ",
"rawValue": [
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],
"parsedValue": [
{
"type": "number",
"value": 0.00001
}
]
},
{
"key": "Maximum Number of Method Steps ",
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"value": 10000
}
]
},
{
"key": "1st Variale for plotting ",
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"X[0] "
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{
"type": "string",
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{
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{
"type": "string",
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}
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{
"type": "number",
"value": 100
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]
},
{
"key": "1st Value Minimum for plotting ",
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"type": "number",
"value": 0
}
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},
{
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"type": "number",
"value": 1
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},
{
"key": "2nd Value Minimum for plotting ",
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"parsedValue": [
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"type": "number",
"value": 0
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},
{
"key": "Distance between Plotting points ",
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"parsedValue": [
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"type": "number",
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},
{
"key": "Step for Numerical derivation ",
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"parsedValue": [
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"type": "number",
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]
},
{
"key": "(Internal) DbsolveStep WWW Demo ",
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},
{
"key": "Elementary Constant ",
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{
"key": "FileOutput ",
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"parsedValue": [
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{
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{
"key": "DrawOutput ",
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"parsedValue": [
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{
"key": "TransferLast ",
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"parsedValue": [
{
"type": "number",
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{
"key": "Stoichiometric Matrix ",
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{
"key": "Elementary Constants ",
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{
"key": "Initial concentrations ",
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{
"key": "Initial Stiffness",
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"key": "Initial Family Steps",
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"key": "Number of fitting parameters (Old Income Flux Constant Number) ",
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"value": 53
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},
{
"key": "Number of scan parameters ",
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"parsedValue": [
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"type": "number",
"value": 53
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},
{
"key": "ABsolute Fitting ",
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"type": "number",
"value": 1
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},
{
"key": "Variables for FileOutput ",
"rawValue": [
"A B X[0] X[4] X[5] X[6] X[7] #### "
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"type": "strings",
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"key": "Variables for FileOutputOn ",
"rawValue": [
" #### "
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"type": "strings",
"value": [
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}
]
},
{
"key": "(Internal) Temporary Print Option ",
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"value": 0
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},
{
"key": "LeastFitting ",
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"parsedValue": [
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"type": "number",
"value": 1
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},
{
"key": "Output File Name ",
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{
"type": "string",
"value": "output"
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"type": "strings",
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".txt"
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},
{
"key": "Experimental Data File Name ",
"rawValue": [
"pw.dat "
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{
"type": "string",
"value": "pw"
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"type": "strings",
"value": [
".dat"
]
}
]
]
},
{
"key": "\nRight Hand Sides && \nInitial Values && \nComments Or Selkov DB record",
"rawValue": [
"\n//! Pools \nD=-C+Pool[1];// for D \n//! Volume of compartments \n//! Compound administration \n//! Rate laws \n//!!V_in \nV_in=k1; \n//!!V1 \nV1=k2*A*C; \n//!!V2 \nV2=k3*D; \n//!!V_out \nV_out=k4*B; \n//! Differential equations \n//for A \nF[1]=V_in-V1; \n//for C \nF[2]=-V1+V2; \n//for B \nF[3]=V1-V_out; \n//for D \nF[4]=V1-V2; \n//! Explicit functions ",
"\n//! Data comments \n//! Compound administration \n//! Compound action on target \n//! Auxiliary parameters \n//! Compartment volumes \nDefault=1.000000e+00; \n//! Initial concentrations \nA=1.898501e+00; \nC=1.490793e+00; \nB=1.300637e+00; \nD=1.234049e+00; \n//! Kinetic parameters \nk1=1.944853e+00;//V_in \nk2=1.931480e+00;//V1 \nk3=1.738867e+00;//V2 \nk4=1.541431e+00;//V_out \n//! Buffered concentrations \n//! Parameters for fitting \n//! Pools initial \nPool[1]=D+C; ",
"\n//! Annotation of model variables \n//! Literature cited \n//! Description of experimental data presented in �dat� files \n\n#dbs# "
],
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"header": 1,
"value": " Pools ",
"newLine": true
},
{
"type": "expression",
"value": {
"lhs": "D",
"rhs": "-C+Pool[1]",
"newLine": true
}
},
{
"type": "lineComment",
"header": 0,
"value": " for D ",
"newLine": false
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{
"type": "lineComment",
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"value": " Volume of compartments ",
"newLine": true
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{
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"value": " Compound administration ",
"newLine": true
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{
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"header": 1,
"value": " Rate laws ",
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{
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"header": 2,
"value": "V_in ",
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"newLine": true
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"header": 2,
"value": "V1 ",
"newLine": true
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"newLine": true
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"value": "V2 ",
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"header": 0,
"value": "for C ",
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{
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"newLine": true
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{
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"value": " Auxiliary parameters ",
"newLine": true
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{
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"header": 1,
"value": " Compartment volumes ",
"newLine": true
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{
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"value": {
"lhs": "Default",
"rhs": "1.000000e+00",
"newLine": true
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""
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"type": "lineComment",
"header": 1,
"value": " Initial concentrations ",
"newLine": true
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"lhs": "A",
"rhs": "1.898501e+00",
"newLine": true
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"newLine": true
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"newLine": true
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"newLine": true
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{
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"newLine": false
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{
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"newLine": true
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"newLine": false
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"newLine": true
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"value": "V2 ",
"newLine": false
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{
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"lhs": "k4",
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"newLine": true
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{
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{
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"value": " Parameters for fitting ",
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{
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{
"key": "The Number of Active P[i] for fitting ",
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"parsedValue": [
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},
{
"key": "Relative step",
"rawValue": [
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"parsedValue": [
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"value": 0.1
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{
"key": "Tolerance for fitting sens",
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"parsedValue": [
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{
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{
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{
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