siafun
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A collection of structure induction algorithms
33 lines (32 loc) • 1.71 kB
JavaScript
;
Object.defineProperty(exports, "__esModule", { value: true });
var structure_1 = require("./structure");
exports.getStructure = structure_1.getStructure;
exports.getCosiatec = structure_1.getCosiatec;
exports.getCosiatecIndexOccurrences = structure_1.getCosiatecIndexOccurrences;
exports.getSmithWaterman = structure_1.getSmithWaterman;
exports.getDualSmithWaterman = structure_1.getDualSmithWaterman;
exports.getMultiCosiatec = structure_1.getMultiCosiatec;
var sw_structure_1 = require("./sw-structure");
exports.getSimpleSmithWatermanPath = sw_structure_1.getSimpleSmithWatermanPath;
var hierarchies_1 = require("./hierarchies");
exports.inferHierarchyFromMatrix = hierarchies_1.inferHierarchyFromMatrix;
exports.inferHierarchyFromTypeSequence = hierarchies_1.inferHierarchyFromTypeSequence;
var similarity_1 = require("./similarity");
exports.getSelfSimilarityMatrix = similarity_1.getSelfSimilarityMatrix;
exports.getAffinityAlignment = similarity_1.getAffinityAlignment;
var quantizer_1 = require("./quantizer");
exports.Quantizer = quantizer_1.Quantizer;
exports.QUANT_FUNCS = quantizer_1.QUANT_FUNCS;
var smith_waterman_1 = require("./smith-waterman");
exports.SmithWaterman = smith_waterman_1.SmithWaterman;
var heuristics_1 = require("./heuristics");
exports.HEURISTICS = heuristics_1.HEURISTICS;
var optimizer_1 = require("./optimizer");
exports.OPTIMIZATION = optimizer_1.OPTIMIZATION;
var opsiatec_1 = require("./opsiatec");
exports.getCosiatecOptionsString = opsiatec_1.getCosiatecOptionsString;
var graphs_1 = require("./graphs");
exports.getConnectednessRatings = graphs_1.getConnectednessRatings;
var util_1 = require("./util");
exports.pointsToIndices = util_1.pointsToIndices;