siafun/lib/hierarchizer.d.ts

A collection of structure induction algorithms

export interface Segmentation {
    p: number;
    l: number;
    ts: number[];
}
export declare class Hierarchizer {
    /** assumes that all occurrences of segments are of the same length! */
    inferHierarchyFromPatterns(patterns: number[][][]): void;
    inferHierarchyFromSegmentMatrix(matrix: number[][]): number[][];
    private buildHierarchy;
    private filterAndSortSegmentations;
    private patternsToSegmentations;
    private matrixToSegmentations;
    private segmentationsToMatrix;
    private alignmentToSegmentation;
    private updateSegmentations;
    private toSegmentation;
    private processOverlaps;
    private split;
    divideAtPos(s: Segmentation, pos: number): Segmentation[];
    /** divides the segmentation s at position loc */
    private divide;
    private merge;
}