recxmltorecjson
Version:
Converts recxml to recjson
503 lines • 23.9 kB
text/xml
<phyloxml
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xmlns="http://www.phyloxml.org" xsi:schemaLocation="recxml.xsd">
<phylogeny rooted="true">
<clade>
<name>.35</name>
<branch_length>0</branch_length>
<eventsRec>
<speciation speciesLocation="35"></speciation>
</eventsRec>
<clade>
<name>.34.20.3</name>
<branch_length>0.471496</branch_length>
<eventsRec>
<speciationLoss speciesLocation="34"></speciationLoss>
<speciationLoss speciesLocation="20"></speciationLoss>
<speciation speciesLocation="3"></speciation>
</eventsRec>
<clade>
<name>SYNJB_1_PE950</name>
<branch_length>0.0567907</branch_length>
<eventsRec>
<leaf speciesLocation="SYNJB" geneName="SYNJB_1_PE950"></leaf>
</eventsRec>
</clade>
<clade>
<name>SYNJA_1_PE2030</name>
<branch_length>0.0454848</branch_length>
<eventsRec>
<leaf speciesLocation="SYNJA" geneName="SYNJA_1_PE2030"></leaf>
</eventsRec>
</clade>
</clade>
<clade>
<name>.33</name>
<branch_length>0.471496</branch_length>
<eventsRec>
<speciation speciesLocation="33"></speciation>
</eventsRec>
<clade>
<name>.27.26</name>
<branch_length>0.198936</branch_length>
<eventsRec>
<speciationLoss speciesLocation="27"></speciationLoss>
<speciation speciesLocation="26"></speciation>
</eventsRec>
<clade>
<name>CYAP4_1_PE420</name>
<branch_length>0.266217</branch_length>
<eventsRec>
<leaf speciesLocation="CYAP4" geneName="CYAP4_1_PE420"></leaf>
</eventsRec>
</clade>
<clade>
<name>T@1|THEEB</name>
<branch_length>0.131324</branch_length>
<eventsRec>
<speciationOut speciesLocation="THEEB" timeSlice="1"></speciationOut>
</eventsRec>
<clade>
<name>THEEB_1_PE1494</name>
<branch_length>0.334417</branch_length>
<eventsRec>
<leaf speciesLocation="THEEB" geneName="THEEB_1_PE1494"></leaf>
</eventsRec>
</clade>
<clade>
<name>GLVIO1_1_PE1169@0|GLVIO1</name>
<branch_length>0.724426</branch_length>
<eventsRec>
<transfertLoss destinationSpecies="GLVIO1" timeSlice="0"></transfertLoss>
<leaf speciesLocation="GLVIO1" geneName="GLVIO1_1_PE1169"></leaf>
</eventsRec>
</clade>
</clade>
</clade>
<clade>
<name>.32</name>
<branch_length>0.0795774</branch_length>
<eventsRec>
<speciation speciesLocation="32"></speciation>
</eventsRec>
<clade>
<name>.31</name>
<branch_length>0.0665971</branch_length>
<eventsRec>
<speciation speciesLocation="31"></speciation>
</eventsRec>
<clade>
<name>TRIEI_1_PE668</name>
<branch_length>0.263141</branch_length>
<eventsRec>
<leaf speciesLocation="TRIEI" geneName="TRIEI_1_PE668"></leaf>
</eventsRec>
</clade>
<clade>
<name>.18</name>
<branch_length>0.147972</branch_length>
<eventsRec>
<speciation speciesLocation="18"></speciation>
</eventsRec>
<clade>
<name>NOSP7_2_PE4607</name>
<branch_length>0.0631294</branch_length>
<eventsRec>
<leaf speciesLocation="NOSP7" geneName="NOSP7_2_PE4607"></leaf>
</eventsRec>
</clade>
<clade>
<name>.6</name>
<branch_length>0.0482404</branch_length>
<eventsRec>
<speciation speciesLocation="6"></speciation>
</eventsRec>
<clade>
<name>ANAVT_4_PE931</name>
<branch_length>0.0147708</branch_length>
<eventsRec>
<leaf speciesLocation="ANAVT" geneName="ANAVT_4_PE931"></leaf>
</eventsRec>
</clade>
<clade>
<name>ANASP_6_PE2969</name>
<branch_length>0.0205304</branch_length>
<eventsRec>
<leaf speciesLocation="ANASP" geneName="ANASP_6_PE2969"></leaf>
</eventsRec>
</clade>
</clade>
</clade>
</clade>
<clade>
<name>.30</name>
<branch_length>0.0585885</branch_length>
<eventsRec>
<speciation speciesLocation="30"></speciation>
</eventsRec>
<clade>
<name>ACAM1_1_PE135.T@27|SYNP2@26|ACAM1</name>
<branch_length>0.251017</branch_length>
<eventsRec>
<speciationOutLoss speciesLocation="SYNP2" timeSlice="27"></speciationOutLoss>
<transfertLoss destinationSpecies="ACAM1" timeSlice="26"></transfertLoss>
<leaf speciesLocation="ACAM1" geneName="ACAM1_1_PE135"></leaf>
</eventsRec>
</clade>
<clade>
<name>.29</name>
<branch_length>0.0848267</branch_length>
<eventsRec>
<speciation speciesLocation="29"></speciation>
</eventsRec>
<clade>
<name>.25</name>
<branch_length>0.0613626</branch_length>
<eventsRec>
<speciation speciesLocation="25"></speciation>
</eventsRec>
<clade>
<name>.15</name>
<branch_length>0.054886</branch_length>
<eventsRec>
<speciation speciesLocation="15"></speciation>
</eventsRec>
<clade>
<name>CYAA5_6_PE594</name>
<branch_length>0.221589</branch_length>
<eventsRec>
<leaf speciesLocation="CYAA5" geneName="CYAA5_6_PE594"></leaf>
</eventsRec>
</clade>
<clade>
<name>CYAP8_1_PE2632</name>
<branch_length>0.176689</branch_length>
<eventsRec>
<leaf speciesLocation="CYAP8" geneName="CYAP8_1_PE2632"></leaf>
</eventsRec>
</clade>
</clade>
<clade>
<name>.24</name>
<branch_length>0.0380066</branch_length>
<eventsRec>
<speciation speciesLocation="24"></speciation>
</eventsRec>
<clade>
<name>CYAP7_1_PE2280</name>
<branch_length>0.17352</branch_length>
<eventsRec>
<leaf speciesLocation="CYAP7" geneName="CYAP7_1_PE2280"></leaf>
</eventsRec>
</clade>
<clade>
<name>MICAN_1_PE2716</name>
<branch_length>0.244643</branch_length>
<eventsRec>
<leaf speciesLocation="MICAN" geneName="MICAN_1_PE2716"></leaf>
</eventsRec>
</clade>
</clade>
</clade>
<clade>
<name>T@23|SYNY3</name>
<branch_length>0.118545</branch_length>
<eventsRec>
<speciationOut speciesLocation="SYNY3" timeSlice="23"></speciationOut>
</eventsRec>
<clade>
<name>SYNY3_4_PE2642</name>
<branch_length>0.22923</branch_length>
<eventsRec>
<leaf speciesLocation="SYNY3" geneName="SYNY3_4_PE2642"></leaf>
</eventsRec>
</clade>
<clade>
<name>Tb@23|23</name>
<branch_length>0.125576</branch_length>
<eventsRec>
<speciationOut speciesLocation="23" timeSlice="23"></speciationOut>
</eventsRec>
<clade>
<name>@22|1.1</name>
<branch_length>0.280026</branch_length>
<eventsRec>
<transfertLoss destinationSpecies="1" timeSlice="22"></transfertLoss>
<speciation speciesLocation="1"></speciation>
</eventsRec>
<clade>
<name>SYNE7_1_PE221</name>
<branch_length>0.00291872</branch_length>
<eventsRec>
<leaf speciesLocation="SYNE7" geneName="SYNE7_1_PE221"></leaf>
</eventsRec>
</clade>
<clade>
<name>SYNP6_1_PE1291</name>
<branch_length>0.00296591</branch_length>
<eventsRec>
<leaf speciesLocation="SYNP6" geneName="SYNP6_1_PE1291"></leaf>
</eventsRec>
</clade>
</clade>
<clade>
<name>.23</name>
<branch_length>0.810502</branch_length>
<eventsRec>
<speciation speciesLocation="23"></speciation>
</eventsRec>
<clade>
<name>SYNR3_2_PE944</name>
<branch_length>0.670514</branch_length>
<eventsRec>
<leaf speciesLocation="SYNR3" geneName="SYNR3_2_PE944"></leaf>
</eventsRec>
</clade>
<clade>
<name>T@22|22</name>
<branch_length>0.0960767</branch_length>
<eventsRec>
<speciationOut speciesLocation="22" timeSlice="22"></speciationOut>
</eventsRec>
<clade>
<name>@18|11.11</name>
<branch_length>0.112066</branch_length>
<eventsRec>
<transfertLoss destinationSpecies="11" timeSlice="18"></transfertLoss>
<speciation speciesLocation="11"></speciation>
</eventsRec>
<clade>
<name>SYNPW_2_PE774</name>
<branch_length>0.182687</branch_length>
<eventsRec>
<leaf speciesLocation="SYNPW" geneName="SYNPW_2_PE774"></leaf>
</eventsRec>
</clade>
<clade>
<name>SYNS3_1_PE1833</name>
<branch_length>0.162686</branch_length>
<eventsRec>
<leaf speciesLocation="SYNS3" geneName="SYNS3_1_PE1833"></leaf>
</eventsRec>
</clade>
</clade>
<clade>
<name>.22</name>
<branch_length>0.053263</branch_length>
<eventsRec>
<speciation speciesLocation="22"></speciation>
</eventsRec>
<clade>
<name>.19.13</name>
<branch_length>0.133917</branch_length>
<eventsRec>
<speciationLoss speciesLocation="19"></speciationLoss>
<speciation speciesLocation="13"></speciation>
</eventsRec>
<clade>
<name>SYNPX_1_PE1481</name>
<branch_length>0.117437</branch_length>
<eventsRec>
<leaf speciesLocation="SYNPX" geneName="SYNPX_1_PE1481"></leaf>
</eventsRec>
</clade>
<clade>
<name>.12</name>
<branch_length>0.0190145</branch_length>
<eventsRec>
<speciation speciesLocation="12"></speciation>
</eventsRec>
<clade>
<name>SYNSC_1_PE1008</name>
<branch_length>0.161326</branch_length>
<eventsRec>
<leaf speciesLocation="SYNSC" geneName="SYNSC_1_PE1008"></leaf>
</eventsRec>
</clade>
<clade>
<name>SYNS9_1_PE925</name>
<branch_length>0.146404</branch_length>
<eventsRec>
<leaf speciesLocation="SYNS9" geneName="SYNS9_1_PE925"></leaf>
</eventsRec>
</clade>
</clade>
</clade>
<clade>
<name>.21</name>
<branch_length>0.0627178</branch_length>
<eventsRec>
<speciation speciesLocation="21"></speciation>
</eventsRec>
<clade>
<name>.4</name>
<branch_length>0.144436</branch_length>
<eventsRec>
<speciation speciesLocation="4"></speciation>
</eventsRec>
<clade>
<name>PROM3_1_PE1845</name>
<branch_length>0.00426106</branch_length>
<eventsRec>
<leaf speciesLocation="PROM3" geneName="PROM3_1_PE1845"></leaf>
</eventsRec>
</clade>
<clade>
<name>PROMM_1_PE495</name>
<branch_length>0.0101808</branch_length>
<eventsRec>
<leaf speciesLocation="PROMM" geneName="PROMM_1_PE495"></leaf>
</eventsRec>
</clade>
</clade>
<clade>
<name>.17</name>
<branch_length>0.191706</branch_length>
<eventsRec>
<speciation speciesLocation="17"></speciation>
</eventsRec>
<clade>
<name>.16.2</name>
<branch_length>0.37948</branch_length>
<eventsRec>
<speciationLoss speciesLocation="16"></speciationLoss>
<speciation speciesLocation="2"></speciation>
</eventsRec>
<clade>
<name>PROM1_1_PE651</name>
<branch_length>0.00569711</branch_length>
<eventsRec>
<leaf speciesLocation="PROM1" geneName="PROM1_1_PE651"></leaf>
</eventsRec>
</clade>
<clade>
<name>PROMT_1_PE635</name>
<branch_length>0.0158877</branch_length>
<eventsRec>
<leaf speciesLocation="PROMT" geneName="PROMT_1_PE635"></leaf>
</eventsRec>
</clade>
</clade>
<clade>
<name>.14</name>
<branch_length>0.0755022</branch_length>
<eventsRec>
<speciation speciesLocation="14"></speciation>
</eventsRec>
<clade>
<name>PRMAR1_1_PE1063</name>
<branch_length>0.316481</branch_length>
<eventsRec>
<leaf speciesLocation="PRMAR1" geneName="PRMAR1_1_PE1063"></leaf>
</eventsRec>
</clade>
<clade>
<name>T@10|PROM4</name>
<branch_length>0.116101</branch_length>
<eventsRec>
<speciationOut speciesLocation="PROM4" timeSlice="10"></speciationOut>
</eventsRec>
<clade>
<name>PROM4_1_PE1056</name>
<branch_length>0.246757</branch_length>
<eventsRec>
<leaf speciesLocation="PROM4" geneName="PROM4_1_PE1056"></leaf>
</eventsRec>
</clade>
<clade>
<name>Tb@10|10</name>
<branch_length>0.547024</branch_length>
<eventsRec>
<speciationOut speciesLocation="10" timeSlice="10"></speciationOut>
</eventsRec>
<clade>
<name>PROM5_1_PE662@4|PROM5</name>
<branch_length>0.159894</branch_length>
<eventsRec>
<transfertLoss destinationSpecies="PROM5" timeSlice="4"></transfertLoss>
<leaf speciesLocation="PROM5" geneName="PROM5_1_PE662"></leaf>
</eventsRec>
</clade>
<clade>
<name>.10</name>
<branch_length>0.0655906</branch_length>
<eventsRec>
<speciation speciesLocation="10"></speciation>
</eventsRec>
<clade>
<name>PROMP_1_PE651.5</name>
<branch_length>0.128953</branch_length>
<eventsRec>
<speciationLoss speciesLocation="5"></speciationLoss>
<leaf speciesLocation="PROMP" geneName="PROMP_1_PE651"></leaf>
</eventsRec>
</clade>
<clade>
<name>.9</name>
<branch_length>0.0287127</branch_length>
<eventsRec>
<speciation speciesLocation="9"></speciation>
</eventsRec>
<clade>
<name>PROM9_1_PE623</name>
<branch_length>0.0631102</branch_length>
<eventsRec>
<leaf speciesLocation="PROM9" geneName="PROM9_1_PE623"></leaf>
</eventsRec>
</clade>
<clade>
<name>.8.7</name>
<branch_length>0.0223265</branch_length>
<eventsRec>
<speciationLoss speciesLocation="8"></speciationLoss>
<speciation speciesLocation="7"></speciation>
</eventsRec>
<clade>
<name>PROMS_1_PE651</name>
<branch_length>0.00945917</branch_length>
<eventsRec>
<leaf speciesLocation="PROMS" geneName="PROMS_1_PE651"></leaf>
</eventsRec>
</clade>
<clade>
<name>T@1|PROM0</name>
<branch_length>0.00690004</branch_length>
<eventsRec>
<speciationOut speciesLocation="PROM0" timeSlice="1"></speciationOut>
</eventsRec>
<clade>
<name>PROM0_1_PE623</name>
<branch_length>0.0104173</branch_length>
<eventsRec>
<leaf speciesLocation="PROM0" geneName="PROM0_1_PE623"></leaf>
</eventsRec>
</clade>
<clade>
<name>PROM2_1_PE676@0|PROM2</name>
<branch_length>0.0280294</branch_length>
<eventsRec>
<transfertLoss destinationSpecies="PROM2" timeSlice="0"></transfertLoss>
<leaf speciesLocation="PROM2" geneName="PROM2_1_PE676"></leaf>
</eventsRec>
</clade>
</clade>
</clade>
</clade>
</clade>
</clade>
</clade>
</clade>
</clade>
</clade>
</clade>
</clade>
</clade>
</clade>
</clade>
</clade>
</clade>
</clade>
</clade>
</clade>
</phylogeny>
</phyloxml>