react-mutation-mapper/dist/component/mutationTable/MutationColumnHelper.d.ts

Generic Mutation Mapper

import { Mutation } from 'cbioportal-utils';
import { Column } from 'react-table';
import { proteinChangeSortMethod } from '../column/ProteinChange';
import { annotationSortMethod } from '../column/Annotation';
import { gnomadSortMethod } from '../column/Gnomad';
import { clinvarSortMethod } from '../column/ClinvarInterpretation';
import { dbsnpSortMethod } from '../column/Dbsnp';
import { hgvscSortMethod } from '../column/Hgvsc';
import { hgvsgSortMethod } from '../column/Hgvsg';
import { signalSortMethod } from '../column/Signal';
export declare enum MutationColumn {
    PROTEIN_CHANGE = "proteinChange",
    ANNOTATION = "annotation",
    MUTATION_STATUS = "mutationStatus",
    MUTATION_TYPE = "mutationType",
    CHROMOSOME = "chromosome",
    START_POSITION = "startPosition",
    END_POSITION = "endPosition",
    REFERENCE_ALLELE = "referenceAllele",
    VARIANT_ALLELE = "variantAllele",
    HGVSG = "hgvsg",
    HGVSC = "hgvsc",
    GNOMAD = "gnomad",
    CLINVAR = "clinvar",
    DBSNP = "dbsnp",
    SIGNAL = "signal"
}
export declare enum MutationColumnName {
    PROTEIN_CHANGE = "Protein Change",
    ANNOTATION = "Annotation",
    MUTATION_STATUS = "Mutation Status",
    MUTATION_TYPE = "Mutation Type",
    CHROMOSOME = "Chromosome",
    START_POSITION = "Start Pos",
    END_POSITION = "End Pos",
    REFERENCE_ALLELE = "Ref",
    VARIANT_ALLELE = "Var",
    HGVSG = "HGVSg",
    HGVSC = "HGVSc",
    GNOMAD = "gnomAD",
    CLINVAR = "ClinVar",
    DBSNP = "dbSNP",
    SIGNAL = "SIGNAL"
}
export declare function rightAlignedCell(cellProps: any): JSX.Element;
export declare const MUTATION_COLUMN_HEADERS: {
    proteinChange: JSX.Element;
    annotation: JSX.Element;
    mutationStatus: JSX.Element;
    mutationType: JSX.Element;
    chromosome: JSX.Element;
    startPosition: JSX.Element;
    endPosition: JSX.Element;
    referenceAllele: JSX.Element;
    variantAllele: JSX.Element;
    hgvsg: JSX.Element;
    hgvsc: JSX.Element;
    gnomad: JSX.Element;
    clinvar: JSX.Element;
    dbsnp: JSX.Element;
    signal: JSX.Element;
};
/**
 * These default columns only include static props.
 * So, for some columns, like Annotation, no default accessor or Cell (render) properties included.
 */
export declare const MUTATION_COLUMNS_DEFINITION: {
    proteinChange: {
        id: MutationColumn;
        name: MutationColumnName;
        accessor: MutationColumn;
        searchable: boolean;
        Cell: (column: any) => JSX.Element;
        Header: JSX.Element;
        sortMethod: typeof proteinChangeSortMethod;
    };
    annotation: {
        id: MutationColumn;
        name: MutationColumnName;
        Header: JSX.Element;
        sortMethod: typeof annotationSortMethod;
    };
    mutationType: {
        id: MutationColumn;
        name: MutationColumnName;
        accessor: MutationColumn;
        searchable: boolean;
        Cell: (column: any) => JSX.Element;
        Header: JSX.Element;
    };
    mutationStatus: {
        id: MutationColumn;
        name: MutationColumnName;
        accessor: MutationColumn;
        searchable: boolean;
        Cell: (column: any) => JSX.Element;
        Header: JSX.Element;
    };
    chromosome: {
        id: MutationColumn;
        name: MutationColumnName;
        accessor: MutationColumn;
        searchable: boolean;
        Cell: typeof rightAlignedCell;
        Header: JSX.Element;
        show: boolean;
    };
    startPosition: {
        id: MutationColumn;
        name: MutationColumnName;
        accessor: MutationColumn;
        searchable: boolean;
        Cell: typeof rightAlignedCell;
        Header: JSX.Element;
        show: boolean;
    };
    endPosition: {
        id: MutationColumn;
        name: MutationColumnName;
        accessor: MutationColumn;
        searchable: boolean;
        Cell: typeof rightAlignedCell;
        Header: JSX.Element;
        show: boolean;
    };
    referenceAllele: {
        id: MutationColumn;
        name: MutationColumnName;
        accessor: MutationColumn;
        searchable: boolean;
        Header: JSX.Element;
        show: boolean;
    };
    variantAllele: {
        id: MutationColumn;
        name: MutationColumnName;
        accessor: MutationColumn;
        searchable: boolean;
        Header: JSX.Element;
        show: boolean;
    };
    hgvsg: {
        id: MutationColumn;
        name: MutationColumnName;
        Header: JSX.Element;
        sortMethod: typeof hgvsgSortMethod;
    };
    hgvsc: {
        id: MutationColumn;
        name: MutationColumnName;
        Header: JSX.Element;
        sortMethod: typeof hgvscSortMethod;
    };
    gnomad: {
        id: MutationColumn;
        name: MutationColumnName;
        Header: JSX.Element;
        sortMethod: typeof gnomadSortMethod;
    };
    clinvar: {
        id: MutationColumn;
        name: MutationColumnName;
        Header: JSX.Element;
        sortMethod: typeof clinvarSortMethod;
        show: boolean;
    };
    dbsnp: {
        id: MutationColumn;
        name: MutationColumnName;
        Header: JSX.Element;
        sortMethod: typeof dbsnpSortMethod;
        show: boolean;
    };
    signal: {
        id: MutationColumn;
        name: MutationColumnName;
        Header: JSX.Element;
        sortMethod: typeof signalSortMethod;
        show: boolean;
    };
};
export declare const DEFAULT_MUTATION_COLUMNS: ({
    id: MutationColumn;
    name: MutationColumnName;
    accessor: MutationColumn;
    searchable: boolean;
    Cell: (column: any) => JSX.Element;
    Header: JSX.Element;
} | {
    id: MutationColumn;
    name: MutationColumnName;
    accessor: MutationColumn;
    searchable: boolean;
    Header: JSX.Element;
    show: boolean;
} | {
    id: MutationColumn;
    name: MutationColumnName;
    Header: JSX.Element;
    sortMethod: typeof hgvsgSortMethod;
} | {
    id: MutationColumn;
    name: MutationColumnName;
    Header: JSX.Element;
    sortMethod: typeof gnomadSortMethod;
} | {
    id: MutationColumn;
    name: MutationColumnName;
    Header: JSX.Element;
    sortMethod: typeof clinvarSortMethod;
    show: boolean;
} | {
    id: MutationColumn;
    name: MutationColumnName;
    Header: JSX.Element;
    sortMethod: typeof signalSortMethod;
    show: boolean;
})[];
export declare function mergeColumns(defaultColumns: Column<Partial<Mutation>>[], customColumns: Column<Partial<Mutation>>[]): Column<Partial<Mutation>>[];