react-mutation-mapper/dist/component/lollipopMutationPlot/LollipopMutationPlot.d.ts

Generic Mutation Mapper

import { MobxCache, Mutation } from 'cbioportal-utils';
import * as React from 'react';
import { LollipopPlotControlsConfig } from '../../model/LollipopPlotControlsConfig';
import { LollipopPlacement, LollipopSpec } from '../../model/LollipopSpec';
import { MutationMapperStore } from '../../model/MutationMapperStore';
import { TrackDataStatus, TrackName, TrackVisibility } from '../track/TrackSelector';
import './lollipopMutationPlot.scss';
import { AxisScale } from './AxisScaleSwitch';
export declare type LollipopMutationPlotProps<T extends Mutation> = {
    store: MutationMapperStore<T>;
    controlsConfig?: LollipopPlotControlsConfig;
    pubMedCache?: MobxCache;
    mutationAlignerCache?: MobxCache<string>;
    getLollipopColor?: (mutations: Partial<T>[]) => string;
    isPutativeDriver?: (mutation: Partial<T>) => boolean;
    getMutationCount?: (mutation: Partial<T>) => number;
    topYAxisSymbol?: string;
    bottomYAxisSymbol?: string;
    topYAxisDefaultMax?: number;
    topYAxisDefaultMin?: number;
    yMaxFractionDigits?: number;
    yMaxLabelPostfix?: string;
    showYAxis?: boolean;
    yAxisSameScale?: boolean;
    bottomYAxisDefaultMax?: number;
    bottomYAxisDefaultMin?: number;
    yAxisLabelPadding?: number;
    lollipopTooltipCountInfo?: (count: number, mutations?: Partial<T>[], axisMode?: AxisScale, group?: string) => JSX.Element;
    yAxisLabelFormatter?: (symbol?: string, groupName?: string) => string;
    axisMode?: AxisScale;
    onScaleToggle?: (selectedScale: AxisScale) => void;
    customControls?: JSX.Element;
    onXAxisOffset?: (offset: number) => void;
    geneWidth: number;
    vizHeight?: number;
    trackVisibility?: TrackVisibility;
    tracks?: TrackName[];
    trackDataStatus?: TrackDataStatus;
    showTrackSelector?: boolean;
    onTrackVisibilityChange?: (selectedTrackIds: string[]) => void;
    autoHideControls?: boolean;
    showYMaxSlider?: boolean;
    showLegendToggle?: boolean;
    showDownloadControls?: boolean;
    showPercentToggle?: boolean;
    filterResetPanel?: JSX.Element;
    legend?: JSX.Element;
    loadingIndicator?: JSX.Element;
    collapsePtmTrack?: boolean;
    collapseUniprotTopologyTrack?: boolean;
};
export default class LollipopMutationPlot<T extends Mutation> extends React.Component<LollipopMutationPlotProps<T>, {}> {
    static defaultProps: Partial<LollipopMutationPlotProps<any>>;
    private mouseInPlot;
    private yMaxInputFocused;
    private geneXOffset;
    private _trackVisibility;
    private _controlsConfig;
    private handlers;
    private divContainer;
    private get showControls();
    private get trackVisibility();
    private get controlsConfig();
    private lollipopTooltip;
    protected get groups(): string[] | undefined;
    protected get lollipops(): LollipopSpec[];
    protected getLollipopSpecs(mutationsByPosition: {
        [pos: number]: T[];
    }, countsByPosition: {
        [pos: number]: number;
    }, group?: string, placement?: LollipopPlacement): LollipopSpec[];
    private createInitialSpecs;
    private getNumLabelCandidates;
    private labelOneLollipopByDefault;
    private getNumLabelsToShow;
    private isInvalidPosition;
    private getRemainingDomains;
    private createLabel;
    private get domains();
    private get domainColorMap();
    private get domainMap();
    private get proteinLength();
    private sequenceTooltip;
    private get sequence();
    private getSVG;
    get hugoGeneSymbol(): string;
    get countRange(): [number, number];
    get bottomCountRange(): [number, number];
    constructor(props: LollipopMutationPlotProps<T>);
    get yMaxSlider(): number;
    get yMaxStep(): number;
    get yMaxSliderStep(): number;
    get bottomYMaxSlider(): number;
    get bottomYMaxSliderStep(): number;
    get yMaxInput(): number;
    get bottomYMaxInput(): number;
    private onXAxisOffset;
    protected onTrackVisibilityChange(selectedTrackNames: string[]): void;
    render(): JSX.Element;
}