qiprofile

define ['angular', 'lodash', 'resources', 'session'], (ng, _) -> modeling = ng.module 'qiprofile.modeling', ['qiprofile.resources'] modeling.factory 'Modeling', [ 'ObjectHelper', (ObjectHelper) -> # @param accum the object in which to place the # source type: {source id: result} associations # @param session the session object # @returns the accumulator object associate = (accum, session) -> collect = (accum, modeling) -> assocPcl = accum[modeling.protocol] if not assocPcl? assocPcl = accum[modeling.protocol] = {} if not modeling.source? throw new ReferenceError("The modeling object does not reference" + " a source") pairs = _.toPairs(modeling.source) if pairs.length > 1 throw new ReferenceError("The modeling source references more" + " than one source type:" + " #{ Object.keys(modeling.source) }") [srcType, srcId] = pairs[0] assocSrc = assocPcl[srcType] if not assocSrc? assocSrc = assocPcl[srcType] = {} results = assocSrc[srcId] if not results? results = assocSrc[srcId] = [] results[session.number - 1] = modeling.result accum session.modelings.reduce(collect, accum) flattenBySource = (protocolId, srcAssoc) -> create = (protocolId, sourceType, sourceId, results) -> protocol: protocolId source: ObjectHelper.associate(sourceType, sourceId) results: results sortCriterion = (modeling) -> modeling.source[srcType] flattenBySourceId = (srcType) -> modelings = [] # Make the [{protocol, source, results}] array from # the {source type: {source id: results}} object. for srcId, results of srcAssoc[srcType] mdl = create(protocolId, srcType, srcId, results) modelings.push(mdl) # Return the modeling objects sorted by source id. _.sortBy(modelings, sortCriterion) srcTypes = ['scan', 'registration'] modelingArrays = ( flattenBySourceId(srcType) for srcType in srcTypes ) # Return the [[{protocol, source, results}, ...], ...] array. _.flatten(modelingArrays) # A label map micro-service. LabelMap = # Adds the following modeling label map properties: # * parameterResult - the parent parameter result object # * key - the parent parameterResult key # # @param labelMap the object to extend # @param paramResult the parent parameter result extend: (labelMap, paramResult) -> # Set the parent reference. labelMap.parameterResult = paramResult # Define the virtual properties. Object.defineProperties labelMap, key: get: -> @parameterResult.key # A modeling parameter result micro-service. ParameterResult = # Adds the following modeling parameter result properties: # * key - the parameter result access property name # * modelingResult - the parent modeling result # reference # * overlay - the label map, if it exists and has a # color table # # In addition, if there is a label map, then this function # sets the label map parent modeling parameter reference. # # @param paramResult the object to extend # @param modelingResult the parent modeling result object # @param key the parameter result access property name extend: (paramResult, modelingResult, key) -> # The parameter key property identifies the # parameter, e.g. ktrans. paramResult.key = key # Set the parent modeling result reference. paramResult.modelingResult = modelingResult if paramResult.labelMap? # Set the label map parent reference. LabelMap.extend(paramResult.labelMap, paramResult) # If the label map has a color table, then set # the overlay property. Object.defineProperties paramResult, # @returns the parameter result label map overlay: get: -> @labelMap # @returns the parameter result title title: get: -> "#{ @modelingResult.modeling.title } #{ @key }" # Set the overlay parent reference. paramResult.labelMap.parameterResult = paramResult # A modeling result micro-service. ModelingResult = # Adds the modeling result parent modeling object # reference property and extends the parameter result # objects as described in extendParameterResult. # # @param modelingResult the modeling result object to extend # @param modeling the parent modeling object extend: (modelingResult, modeling) -> # Set the modeling result parent reference. modelingResult.modeling = modeling # Extend each modeling parameter result object. for key, paramResult of modelingResult ParameterResult.extend(paramResult, modelingResult, key) # @param subject the parent subject # @returns the modeling [{source, results}] array, where # each source value is a {source type: source id} # object and the results are the modeling results in # session number order. collect: (subject) -> # Make the {protocol id: {source type: {source id: results}}} # object. assoc = subject.sessions.reduce(associate, {}) # Flatten into a [[{protocol, source, results}, ...], ...] # array of arrays partitioned by protocol id. modelingArrays = ( flattenBySource(pclId, srcAssoc) for pclId, srcAssoc of assoc ) # Flatten into a [{protocol, source, results}, ...] array. _.flatten(modelingArrays) # Extends the modeling result as described in # extendModelingResult and adds the following # modeling object properties: # * session - the parent session object reference # * overlays - the modeling result overlays # # @param modeling the modeling object to extend # @param session the parent session object extend: (modeling, session) -> # Set the modeling parent session reference. modeling.session = session # Extend the modeling result object. ModelingResult.extend(modeling.result, modeling) # Add the virtual properties. Object.defineProperties modeling, # @returns the modeling results which have an overlay, # sorted by modeling parameter name overlays: get: -> # Filter the modeling results for files with an overlay. overlayed = ( res for res in _.values(@result) when res.overlay? ) # Sort the overlayed results. sorted = _.sortBy(overlayed, 'key') # Pluck the overlay from the overlayed results. overlays = _.map(sorted, 'overlay') # @returns the modeling title title: get: -> "#{ @session.title } #{ @resource }" # Return the extended object. modeling # The property metadata, as follows: # * text - plaintext label # * html - HTML label # * color - recommended HTML color properties: fxlKTrans: text: 'FXL Ktrans' html: 'FXL Ktrans' color: 'BurlyWood' fxrKTrans: text: 'FXR Ktrans' html: 'FXR Ktrans' color: 'OliveDrab' deltaKTrans: text: 'Delta Ktrans' html: 'ΔKtrans' color: 'DarkGoldenRod' tauI: text: 'tau_i' html: 'τi' color: 'PaleVioletRed' vE: text: 'v_e' html: 've' color: 'MediumSeaGreen' ]