pipeline-handler/test/code/test_stripnmergeAlignment.cjs

an idependant handler for pipelines (like in perfidy or epitelete)

const { PipelineHandler } = require("../../dist/main");
const { Proskomma } = require("proskomma");
const fse = require("fs-extra");
const path = require("path");
const test = require("tape");
const {Validator} = require("proskomma-json-tools");

const testGroup = "strip and merge";


const perfContent = fse.readFileSync(path.resolve(__dirname, "../data/perfs/MARK_titus_aligned_eng.json")).toString();

const proskomma = new Proskomma([
    {
        name: "org",
        type: "string",
        regex: "^[^\\s]+$"
    },
    {
        name: "lang",
        type: "string",
        regex: "^[^\\s]+$"
    },
    {
        name: "abbr",
        type: "string",
        regex: "^[A-za-z0-9_-]+$"
    }
]);
const pipelineH = new PipelineHandler({ proskomma: proskomma, verbose: false });

let reportStrip = null;
let outputStrip = null;
let output = null;

test(`strip alignment (${testGroup})`, async (t) => {
    t.plan(3);
    try {
        output = await pipelineH.runPipeline("stripAlignmentPipeline", {
            perf: JSON.parse(perfContent),
        });
        // console.log(JSON.stringify(output.perf, "  ", 4));
        outputStrip = output.perf;
        reportStrip = output.strippedAlignment;
        const validator = new Validator();
        let validation = validator.validate(
            'constraint',
            'perfDocument',
            '0.3.0',
            outputStrip
        );
        t.equal(validation.errors, null);
        t.ok(outputStrip, "perf alignment stripped");
        t.ok(reportStrip, "perf report alignement");
        // await saveFile(JSON.stringify(output.perf, null, 2), "test/outputs/STRIP_perf_titus_stripped_eng.json");
        // await saveFile(JSON.stringify(output.strippedAlignment, null, 2), "test/outputs/STRIP_strippedAlignment_stripped_eng.json");    
    } catch (err) {
        console.log(err);
        t.fail("stripAlignmentPipeline throws on valid perf");
    }
});

test(`merge alignment (${testGroup})`, async (t) => {
    t.plan(3);
    try {
        output = await pipelineH.runPipeline("mergeAlignmentPipeline", {
            perf: outputStrip,
            strippedAlignment: reportStrip,
        });
        t.ok(output, "perf alignment stripped");
        // console.log(JSON.stringify(perfContent, " ", 4));
        t.same(output.perf, JSON.parse(perfContent));
        const validator = new Validator();
        let validation = validator.validate(
            'constraint',
            'perfDocument',
            '0.3.0',
            output.perf
        );
        t.equal(validation.errors, null);
        // await saveFile(JSON.stringify(output.perf, null, 2), "test/outputs/STRIP_perf_titus_merged_align_eng.json");
    } catch (err) {
        console.log(err);
        t.fail("mergeAlignmentPipeline throws on valid perf");
    }
});