phylojs/lib/io/readers/tree.js

A simple typescript library for phylogenetic trees

"use strict";
Object.defineProperty(exports, "__esModule", { value: true });
exports.read = void 0;
const __1 = require("../../");
/**
 * Reads trees from a string according to the specified `schema`. TODO: add support for getting trees from a URL.
 * @param {string} text
 * @param {Schema='newick'} schema newick, nexus, phyloXML, or NeXML
 * @returns {Tree[]}
 */
function read(text, schema = 'newick') {
    if (text.startsWith('http://') || text.startsWith('https://')) {
        throw new Error('Fetching trees from the internet is not yet supported');
    }
    switch (schema) {
        case 'newick':
            return (0, __1.readTreesFromNewick)(text);
        case 'nexus':
            return (0, __1.readTreesFromNexus)(text);
        case 'phyloxml':
            return (0, __1.readTreesFromPhyloXML)(text);
        case 'nexml':
            return (0, __1.readTreesFromNeXML)(text);
        case 'phyjson':
            return (0, __1.readTreesFromPhyJSON)(text);
        default:
            throw new Error('Invalid schema');
    }
}
exports.read = read;