pdbe-molstar-3dbionotes/lib/helpers.d.ts

Molstar implementation for PDBe

import { PluginContext } from 'Molstar/mol-plugin/context';
import Expression from 'Molstar/mol-script/language/expression';
import { BuiltInTrajectoryFormat } from 'Molstar/mol-plugin-state/formats/trajectory';
import { Model } from 'Molstar/mol-model/structure';
export declare type SupportedFormats = 'mmcif' | 'bcif' | 'cif' | 'pdb' | 'sdf';
export declare type LoadParams = {
    url: string;
    format?: BuiltInTrajectoryFormat;
    assemblyId?: string;
    isHetView?: boolean;
    isBinary?: boolean;
};
export declare namespace PDBeVolumes {
    function mapParams(defaultParams: any, mapParams: any, ref?: string | number): any;
    function displayUsibilityMessage(plugin: PluginContext): void;
    function toggle(plugin: PluginContext): void;
}
export declare type LigandQueryParam = {
    label_comp_id_list?: any;
    auth_asym_id?: string;
    struct_asym_id?: string;
    label_comp_id?: string;
    auth_seq_id?: number;
};
export declare namespace LigandView {
    function query(ligandViewParams: LigandQueryParam): {
        core: Expression;
        surroundings: Expression;
    };
    function branchedQuery(params: any): {
        core: Expression;
        surroundings: Expression;
    };
}
export declare type QueryParam = {
    auth_seq_id?: number;
    entity_id?: string;
    auth_asym_id?: string;
    struct_asym_id?: string;
    residue_number?: number;
    start_residue_number?: number;
    end_residue_number?: number;
    auth_residue_number?: number;
    auth_ins_code_id?: string;
    start_auth_residue_number?: number;
    start_auth_ins_code_id?: string;
    end_auth_residue_number?: number;
    end_auth_ins_code_id?: string;
    atoms?: string[];
    label_comp_id?: string;
    color?: any;
    sideChain?: boolean;
    representation?: string;
    representationColor?: any;
    focus?: boolean;
    tooltip?: string;
    start?: any;
    end?: any;
};
export declare namespace QueryHelper {
    function getQueryObject(params: QueryParam[]): Expression;
    function getInteractivityLoci(params: any, contextData: any): import("molstar/lib/mol-model/structure/structure/element/loci").Loci;
    function getHetLoci(queryExp: Expression, contextData: any): import("molstar/lib/mol-model/structure/structure/element/loci").Loci;
}
export interface ModelInfo {
    hetNames: string[];
}
export declare namespace ModelInfo {
    function get(model: Model): Promise<ModelInfo>;
}