paraview-glance/dist/itk/readImageEmscriptenFSFile.cjs

Web application for Visualizing Scientific and Medical datasets

"use strict";

const Image = require('./Image.js');

const ImageType = require('./ImageType.js');

const Matrix = require('./Matrix.js');

const imageIOComponentToJSComponent = require('./imageIOComponentToJSComponent.js');

const imageIOPixelTypeToJSPixelType = require('./imageIOPixelTypeToJSPixelType.js');

const readImageEmscriptenFSFile = (imageModule, filePath) => {
  const imageIO = new imageModule.ITKImageIO();
  imageIO.SetFileName(filePath);

  if (!imageIO.CanReadFile(filePath)) {
    throw new Error('Could not read file: ' + filePath);
  }

  imageIO.ReadImageInformation();
  const ioDimensions = imageIO.GetNumberOfDimensions();
  const imageType = new ImageType(ioDimensions);
  const ioComponentType = imageIO.GetComponentType();
  imageType.componentType = imageIOComponentToJSComponent(imageModule, ioComponentType);
  const ioPixelType = imageIO.GetPixelType();
  imageType.pixelType = imageIOPixelTypeToJSPixelType(imageModule, ioPixelType);
  imageType.components = imageIO.GetNumberOfComponents();
  const image = new Image(imageType);
  const ioDirection = new Matrix(ioDimensions, ioDimensions);

  for (let ii = 0; ii < ioDimensions; ++ii) {
    const directionColumn = imageIO.GetDirection(ii);

    for (let jj = 0; jj < ioDimensions; ++jj) {
      ioDirection.setElement(jj, ii, directionColumn.get(jj));
    }
  }

  for (let ii = 0; ii < image.imageType.dimension; ++ii) {
    if (ii < ioDimensions) {
      image.size[ii] = imageIO.GetDimensions(ii);
      image.spacing[ii] = imageIO.GetSpacing(ii);
      image.origin[ii] = imageIO.GetOrigin(ii);

      for (let jj = 0; jj < image.imageType.dimension; ++jj) {
        if (jj < ioDimensions) {
          const element = ioDirection.getElement(jj, ii);
          image.direction.setElement(jj, ii, element);
        } else {
          image.direction.setElement(jj, ii, 0.0);
        }
      }
    } else {
      image.size[ii] = 0;
      image.spacing[ii] = 1.0;
      image.origin[ii] = 0.0;
      image.direction.setIdentity();
    }
  } // Spacing is expected to be greater than 0
  // If negative, flip image direction along this axis.


  for (let ii = 0; ii < image.imageType.dimension; ++ii) {
    if (image.spacing[ii] < 0.0) {
      image.spacing[ii] = -image.spacing[ii];

      for (let jj = 0; jj < image.imageType.dimension; ++jj) {
        image.direction.setElement(ii, jj, -1 * image.direction.getElement(ii, jj));
      }
    }
  }

  image.data = imageIO.Read();
  return image;
};

module.exports = readImageEmscriptenFSFile;