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{"openapi":"3.0.0","info":{"contact":{"name":"Google","url":"https://google.com"},"description":"Uploads, processes, queries, and searches Genomics data in the cloud.","title":"Genomics","version":"v1","x-apiClientRegistration":{"url":"https://console.developers.google.com"},"x-logo":{"url":"https://www.google.com/images/branding/googlelogo/2x/googlelogo_color_272x92dp.png"},"x-origin":[{"converter":{"url":"https://github.com/lucybot/api-spec-converter","version":"2.7.18"},"format":"google","url":"https://genomics.googleapis.com/$discovery/rest?version=v1","version":"v1"}],"x-preferred":true,"x-providerName":"googleapis.com","x-serviceName":"genomics"},"externalDocs":{"url":"https://cloud.google.com/genomics"},"tags":[{"name":"annotations"},{"name":"annotationsets"},{"name":"callsets"},{"name":"datasets"},{"name":"operations"},{"name":"readgroupsets"},{"name":"reads"},{"name":"references"},{"name":"referencesets"},{"name":"variants"},{"name":"variantsets"}],"paths":{"/v1/annotations":{"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"post":{"description":"Creates a new annotation. Caller must have WRITE permission\nfor the associated annotation set.\n\nThe following fields are required:\n\n* annotationSetId\n* referenceName or\n referenceId\n\n### Transcripts\n\nFor annotations of type TRANSCRIPT, the following fields of\ntranscript must be provided:\n\n* exons.start\n* exons.end\n\nAll other fields may be optionally specified, unless documented as being\nserver-generated (for example, the `id` field). The annotated\nrange must be no longer than 100Mbp (mega base pairs). See the\nAnnotation resource\nfor additional restrictions on each field.","operationId":"genomics.annotations.create","requestBody":{"$ref":"#/components/requestBodies/Annotation"},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/Annotation"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]}],"tags":["annotations"]}},"/v1/annotations/search":{"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"post":{"description":"Searches for annotations that match the given criteria. Results are\nordered by genomic coordinate (by reference sequence, then position).\nAnnotations with equivalent genomic coordinates are returned in an\nunspecified order. This order is consistent, such that two queries for the\nsame content (regardless of page size) yield annotations in the same order\nacross their respective streams of paginated responses. Caller must have\nREAD permission for the queried annotation sets.","operationId":"genomics.annotations.search","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/SearchAnnotationsRequest"}}}},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/SearchAnnotationsResponse"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]},{"Oauth2":["https://www.googleapis.com/auth/genomics.readonly"]}],"tags":["annotations"]}},"/v1/annotations/{annotationId}":{"delete":{"description":"Deletes an annotation. Caller must have WRITE permission for\nthe associated annotation set.","operationId":"genomics.annotations.delete","parameters":[{"description":"The ID of the annotation to be deleted.","in":"path","name":"annotationId","required":true,"schema":{"type":"string"}}],"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/Empty"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]}],"tags":["annotations"]},"get":{"description":"Gets an annotation. Caller must have READ permission\nfor the associated annotation set.","operationId":"genomics.annotations.get","parameters":[{"description":"The ID of the annotation to be retrieved.","in":"path","name":"annotationId","required":true,"schema":{"type":"string"}}],"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/Annotation"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]},{"Oauth2":["https://www.googleapis.com/auth/genomics.readonly"]}],"tags":["annotations"]},"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"put":{"description":"Updates an annotation. Caller must have\nWRITE permission for the associated dataset.","operationId":"genomics.annotations.update","parameters":[{"description":"The ID of the annotation to be updated.","in":"path","name":"annotationId","required":true,"schema":{"type":"string"}},{"description":"An optional mask specifying which fields to update. Mutable fields are\nname,\nvariant,\ntranscript, and\ninfo. If unspecified, all mutable\nfields will be updated.","in":"query","name":"updateMask","schema":{"type":"string"}}],"requestBody":{"$ref":"#/components/requestBodies/Annotation"},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/Annotation"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]}],"tags":["annotations"]}},"/v1/annotations:batchCreate":{"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"post":{"description":"Creates one or more new annotations atomically. All annotations must\nbelong to the same annotation set. Caller must have WRITE\npermission for this annotation set. For optimal performance, batch\npositionally adjacent annotations together.\n\nIf the request has a systemic issue, such as an attempt to write to\nan inaccessible annotation set, the entire RPC will fail accordingly. For\nlesser data issues, when possible an error will be isolated to the\ncorresponding batch entry in the response; the remaining well formed\nannotations will be created normally.\n\nFor details on the requirements for each individual annotation resource,\nsee\nCreateAnnotation.","operationId":"genomics.annotations.batchCreate","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/BatchCreateAnnotationsRequest"}}}},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/BatchCreateAnnotationsResponse"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]}],"tags":["annotations"]}},"/v1/annotationsets":{"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"post":{"description":"Creates a new annotation set. Caller must have WRITE permission for the\nassociated dataset.\n\nThe following fields are required:\n\n * datasetId\n * referenceSetId\n\nAll other fields may be optionally specified, unless documented as being\nserver-generated (for example, the `id` field).","operationId":"genomics.annotationsets.create","requestBody":{"$ref":"#/components/requestBodies/AnnotationSet"},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/AnnotationSet"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]}],"tags":["annotationsets"]}},"/v1/annotationsets/search":{"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"post":{"description":"Searches for annotation sets that match the given criteria. Annotation sets\nare returned in an unspecified order. This order is consistent, such that\ntwo queries for the same content (regardless of page size) yield annotation\nsets in the same order across their respective streams of paginated\nresponses. Caller must have READ permission for the queried datasets.","operationId":"genomics.annotationsets.search","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/SearchAnnotationSetsRequest"}}}},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/SearchAnnotationSetsResponse"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]},{"Oauth2":["https://www.googleapis.com/auth/genomics.readonly"]}],"tags":["annotationsets"]}},"/v1/annotationsets/{annotationSetId}":{"delete":{"description":"Deletes an annotation set. Caller must have WRITE permission\nfor the associated annotation set.","operationId":"genomics.annotationsets.delete","parameters":[{"description":"The ID of the annotation set to be deleted.","in":"path","name":"annotationSetId","required":true,"schema":{"type":"string"}}],"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/Empty"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]}],"tags":["annotationsets"]},"get":{"description":"Gets an annotation set. Caller must have READ permission for\nthe associated dataset.","operationId":"genomics.annotationsets.get","parameters":[{"description":"The ID of the annotation set to be retrieved.","in":"path","name":"annotationSetId","required":true,"schema":{"type":"string"}}],"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/AnnotationSet"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]},{"Oauth2":["https://www.googleapis.com/auth/genomics.readonly"]}],"tags":["annotationsets"]},"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"put":{"description":"Updates an annotation set. The update must respect all mutability\nrestrictions and other invariants described on the annotation set resource.\nCaller must have WRITE permission for the associated dataset.","operationId":"genomics.annotationsets.update","parameters":[{"description":"The ID of the annotation set to be updated.","in":"path","name":"annotationSetId","required":true,"schema":{"type":"string"}},{"description":"An optional mask specifying which fields to update. Mutable fields are\nname,\nsource_uri, and\ninfo. If unspecified, all\nmutable fields will be updated.","in":"query","name":"updateMask","schema":{"type":"string"}}],"requestBody":{"$ref":"#/components/requestBodies/AnnotationSet"},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/AnnotationSet"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]}],"tags":["annotationsets"]}},"/v1/callsets":{"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"post":{"description":"Creates a new call set.","operationId":"genomics.callsets.create","requestBody":{"$ref":"#/components/requestBodies/CallSet"},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/CallSet"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]}],"tags":["callsets"]}},"/v1/callsets/search":{"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"post":{"description":"Gets a list of call sets matching the criteria.\n\nImplements\n[GlobalAllianceApi.searchCallSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L178).","operationId":"genomics.callsets.search","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/SearchCallSetsRequest"}}}},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/SearchCallSetsResponse"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]},{"Oauth2":["https://www.googleapis.com/auth/genomics.readonly"]}],"tags":["callsets"]}},"/v1/callsets/{callSetId}":{"delete":{"description":"Deletes a call set.","operationId":"genomics.callsets.delete","parameters":[{"description":"The ID of the call set to be deleted.","in":"path","name":"callSetId","required":true,"schema":{"type":"string"}}],"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/Empty"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]}],"tags":["callsets"]},"get":{"description":"Gets a call set by ID.","operationId":"genomics.callsets.get","parameters":[{"description":"The ID of the call set.","in":"path","name":"callSetId","required":true,"schema":{"type":"string"}}],"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/CallSet"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]},{"Oauth2":["https://www.googleapis.com/auth/genomics.readonly"]}],"tags":["callsets"]},"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"patch":{"description":"Updates a call set.\n\nThis method supports patch semantics.","operationId":"genomics.callsets.patch","parameters":[{"description":"The ID of the call set to be updated.","in":"path","name":"callSetId","required":true,"schema":{"type":"string"}},{"description":"An optional mask specifying which fields to update. At this time, the only\nmutable field is name. The only\nacceptable value is \"name\". If unspecified, all mutable fields will be\nupdated.","in":"query","name":"updateMask","schema":{"type":"string"}}],"requestBody":{"$ref":"#/components/requestBodies/CallSet"},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/CallSet"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]}],"tags":["callsets"]}},"/v1/datasets":{"get":{"description":"Lists datasets within a project.","operationId":"genomics.datasets.list","parameters":[{"description":"The maximum number of results to return in a single page. If unspecified,\ndefaults to 50. The maximum value is 1024.","in":"query","name":"pageSize","schema":{"type":"integer"}},{"description":"The continuation token, which is used to page through large result sets.\nTo get the next page of results, set this parameter to the value of\n`nextPageToken` from the previous response.","in":"query","name":"pageToken","schema":{"type":"string"}},{"description":"Required. The Google Cloud project ID to list datasets for.","in":"query","name":"projectId","schema":{"type":"string"}}],"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/ListDatasetsResponse"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]},{"Oauth2":["https://www.googleapis.com/auth/genomics.readonly"]}],"tags":["datasets"]},"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"post":{"description":"Creates a new dataset.","operationId":"genomics.datasets.create","requestBody":{"$ref":"#/components/requestBodies/Dataset"},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/Dataset"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]}],"tags":["datasets"]}},"/v1/datasets/{datasetId}":{"delete":{"description":"Deletes a dataset and all of its contents (all read group sets,\nreference sets, variant sets, call sets, annotation sets, etc.)\nThis is reversible (up to one week after the deletion) via\nthe\ndatasets.undelete\noperation.","operationId":"genomics.datasets.delete","parameters":[{"description":"The ID of the dataset to be deleted.","in":"path","name":"datasetId","required":true,"schema":{"type":"string"}}],"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/Empty"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]}],"tags":["datasets"]},"get":{"description":"Gets a dataset by ID.","operationId":"genomics.datasets.get","parameters":[{"description":"The ID of the dataset.","in":"path","name":"datasetId","required":true,"schema":{"type":"string"}}],"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/Dataset"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]},{"Oauth2":["https://www.googleapis.com/auth/genomics.readonly"]}],"tags":["datasets"]},"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"patch":{"description":"Updates a dataset.\n\nThis method supports patch semantics.","operationId":"genomics.datasets.patch","parameters":[{"description":"The ID of the dataset to be updated.","in":"path","name":"datasetId","required":true,"schema":{"type":"string"}},{"description":"An optional mask specifying which fields to update. At this time, the only\nmutable field is name. The only\nacceptable value is \"name\". If unspecified, all mutable fields will be\nupdated.","in":"query","name":"updateMask","schema":{"type":"string"}}],"requestBody":{"$ref":"#/components/requestBodies/Dataset"},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/Dataset"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]}],"tags":["datasets"]}},"/v1/datasets/{datasetId}:undelete":{"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"post":{"description":"Undeletes a dataset by restoring a dataset which was deleted via this API.\n\nThis operation is only possible for a week after the deletion occurred.","operationId":"genomics.datasets.undelete","parameters":[{"description":"The ID of the dataset to be undeleted.","in":"path","name":"datasetId","required":true,"schema":{"type":"string"}}],"requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/UndeleteDatasetRequest"}}}},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/Dataset"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]}],"tags":["datasets"]}},"/v1/readgroupsets/search":{"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"post":{"description":"Searches for read group sets matching the criteria.\n\nImplements\n[GlobalAllianceApi.searchReadGroupSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L135).","operationId":"genomics.readgroupsets.search","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/SearchReadGroupSetsRequest"}}}},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/SearchReadGroupSetsResponse"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]},{"Oauth2":["https://www.googleapis.com/auth/genomics.readonly"]}],"tags":["readgroupsets"]}},"/v1/readgroupsets/{readGroupSetId}":{"delete":{"description":"Deletes a read group set.","operationId":"genomics.readgroupsets.delete","parameters":[{"description":"The ID of the read group set to be deleted. The caller must have WRITE\npermissions to the dataset associated with this read group set.","in":"path","name":"readGroupSetId","required":true,"schema":{"type":"string"}}],"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/Empty"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]}],"tags":["readgroupsets"]},"get":{"description":"Gets a read group set by ID.","operationId":"genomics.readgroupsets.get","parameters":[{"description":"The ID of the read group set.","in":"path","name":"readGroupSetId","required":true,"schema":{"type":"string"}}],"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/ReadGroupSet"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]},{"Oauth2":["https://www.googleapis.com/auth/genomics.readonly"]}],"tags":["readgroupsets"]},"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"patch":{"description":"Updates a read group set.\n\nThis method supports patch semantics.","operationId":"genomics.readgroupsets.patch","parameters":[{"description":"The ID of the read group set to be updated. The caller must have WRITE\npermissions to the dataset associated with this read group set.","in":"path","name":"readGroupSetId","required":true,"schema":{"type":"string"}},{"description":"An optional mask specifying which fields to update. Supported fields:\n\n* name.\n* referenceSetId.\n\nLeaving `updateMask` unset is equivalent to specifying all mutable\nfields.","in":"query","name":"updateMask","schema":{"type":"string"}}],"requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ReadGroupSet"}}}},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/ReadGroupSet"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]}],"tags":["readgroupsets"]}},"/v1/readgroupsets/{readGroupSetId}/coveragebuckets":{"get":{"description":"Lists fixed width coverage buckets for a read group set, each of which\ncorrespond to a range of a reference sequence. Each bucket summarizes\ncoverage information across its corresponding genomic range.\n\nCoverage is defined as the number of reads which are aligned to a given\nbase in the reference sequence. Coverage buckets are available at several\nprecomputed bucket widths, enabling retrieval of various coverage 'zoom\nlevels'. The caller must have READ permissions for the target read group\nset.","operationId":"genomics.readgroupsets.coveragebuckets.list","parameters":[{"description":"The end position of the range on the reference, 0-based exclusive. If\nspecified, `referenceName` must also be specified. If unset or 0, defaults\nto the length of the reference.","in":"query","name":"end","schema":{"type":"string"}},{"description":"The maximum number of results to return in a single page. If unspecified,\ndefaults to 1024. The maximum value is 2048.","in":"query","name":"pageSize","schema":{"type":"integer"}},{"description":"The continuation token, which is used to page through large result sets.\nTo get the next page of results, set this parameter to the value of\n`nextPageToken` from the previous response.","in":"query","name":"pageToken","schema":{"type":"string"}},{"description":"Required. The ID of the read group set over which coverage is requested.","in":"path","name":"readGroupSetId","required":true,"schema":{"type":"string"}},{"description":"The name of the reference to query, within the reference set associated\nwith this query. Optional.","in":"query","name":"referenceName","schema":{"type":"string"}},{"description":"The start position of the range on the reference, 0-based inclusive. If\nspecified, `referenceName` must also be specified. Defaults to 0.","in":"query","name":"start","schema":{"type":"string"}},{"description":"The desired width of each reported coverage bucket in base pairs. This\nwill be rounded down to the nearest precomputed bucket width; the value\nof which is returned as `bucketWidth` in the response. Defaults\nto infinity (each bucket spans an entire reference sequence) or the length\nof the target range, if specified. The smallest precomputed\n`bucketWidth` is currently 2048 base pairs; this is subject to\nchange.","in":"query","name":"targetBucketWidth","schema":{"type":"string"}}],"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/ListCoverageBucketsResponse"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]},{"Oauth2":["https://www.googleapis.com/auth/genomics.readonly"]}],"tags":["readgroupsets"]},"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}]},"/v1/readgroupsets/{readGroupSetId}:export":{"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"post":{"description":"Exports a read group set to a BAM file in Google Cloud Storage.\n\nNote that currently there may be some differences between exported BAM\nfiles and the original BAM file at the time of import. See\nImportReadGroupSets\nfor caveats.","operationId":"genomics.readgroupsets.export","parameters":[{"description":"Required. The ID of the read group set to export. The caller must have\nREAD access to this read group set.","in":"path","name":"readGroupSetId","required":true,"schema":{"type":"string"}}],"requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ExportReadGroupSetRequest"}}}},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/Operation"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/devstorage.read_write"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]}],"tags":["readgroupsets"]}},"/v1/readgroupsets:import":{"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"post":{"description":"Creates read group sets by asynchronously importing the provided\ninformation.\n\nThe caller must have WRITE permissions to the dataset.\n\n## Notes on [BAM](https://samtools.github.io/hts-specs/SAMv1.pdf) import\n\n- Tags will be converted to strings - tag types are not preserved\n- Comments (`@CO`) in the input file header will not be preserved\n- Original header order of references (`@SQ`) will not be preserved\n- Any reverse stranded unmapped reads will be reverse complemented, and\ntheir qualities (also the \"BQ\" and \"OQ\" tags, if any) will be reversed\n- Unmapped reads will be stripped of positional information (reference name\nand position)","operationId":"genomics.readgroupsets.import","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ImportReadGroupSetsRequest"}}}},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/Operation"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/devstorage.read_write"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]}],"tags":["readgroupsets"]}},"/v1/reads/search":{"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"post":{"description":"Gets a list of reads for one or more read group sets.\n\nReads search operates over a genomic coordinate space of reference sequence\n& position defined over the reference sequences to which the requested\nread group sets are aligned.\n\nIf a target positional range is specified, search returns all reads whose\nalignment to the reference genome overlap the range. A query which\nspecifies only read group set IDs yields all reads in those read group\nsets, including unmapped reads.\n\nAll reads returned (including reads on subsequent pages) are ordered by\ngenomic coordinate (by reference sequence, then position). Reads with\nequivalent genomic coordinates are returned in an unspecified order. This\norder is consistent, such that two queries for the same content (regardless\nof page size) yield reads in the same order across their respective streams\nof paginated responses.\n\nImplements\n[GlobalAllianceApi.searchReads](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L85).","operationId":"genomics.reads.search","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/SearchReadsRequest"}}}},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/SearchReadsResponse"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]},{"Oauth2":["https://www.googleapis.com/auth/genomics.readonly"]}],"tags":["reads"]}},"/v1/references/search":{"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"post":{"description":"Searches for references which match the given criteria.\n\nImplements\n[GlobalAllianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L146).","operationId":"genomics.references.search","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/SearchReferencesRequest"}}}},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/SearchReferencesResponse"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]},{"Oauth2":["https://www.googleapis.com/auth/genomics.readonly"]}],"tags":["references"]}},"/v1/references/{referenceId}":{"get":{"description":"Gets a reference.\n\nImplements\n[GlobalAllianceApi.getReference](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L158).","operationId":"genomics.references.get","parameters":[{"description":"The ID of the reference.","in":"path","name":"referenceId","required":true,"schema":{"type":"string"}}],"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/Reference"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]},{"Oauth2":["https://www.googleapis.com/auth/genomics.readonly"]}],"tags":["references"]},"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}]},"/v1/references/{referenceId}/bases":{"get":{"description":"Lists the bases in a reference, optionally restricted to a range.\n\nImplements\n[GlobalAllianceApi.getReferenceBases](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L221).","operationId":"genomics.references.bases.list","parameters":[{"description":"The end position (0-based, exclusive) of this query. Defaults to the length\nof this reference.","in":"query","name":"end","schema":{"type":"string"}},{"description":"The maximum number of bases to return in a single page. If unspecified,\ndefaults to 200Kbp (kilo base pairs). The maximum value is 10Mbp (mega base\npairs).","in":"query","name":"pageSize","schema":{"type":"integer"}},{"description":"The continuation token, which is used to page through large result sets.\nTo get the next page of results, set this parameter to the value of\n`nextPageToken` from the previous response.","in":"query","name":"pageToken","schema":{"type":"string"}},{"description":"The ID of the reference.","in":"path","name":"referenceId","required":true,"schema":{"type":"string"}},{"description":"The start position (0-based) of this query. Defaults to 0.","in":"query","name":"start","schema":{"type":"string"}}],"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/ListBasesResponse"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]},{"Oauth2":["https://www.googleapis.com/auth/genomics.readonly"]}],"tags":["references"]},"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}]},"/v1/referencesets/search":{"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"post":{"description":"Searches for reference sets which match the given criteria.\n\nImplements\n[GlobalAllianceApi.searchReferenceSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L71)","operationId":"genomics.referencesets.search","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/SearchReferenceSetsRequest"}}}},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/SearchReferenceSetsResponse"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]},{"Oauth2":["https://www.googleapis.com/auth/genomics.readonly"]}],"tags":["referencesets"]}},"/v1/referencesets/{referenceSetId}":{"get":{"description":"Gets a reference set.\n\nImplements\n[GlobalAllianceApi.getReferenceSet](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L83).","operationId":"genomics.referencesets.get","parameters":[{"description":"The ID of the reference set.","in":"path","name":"referenceSetId","required":true,"schema":{"type":"string"}}],"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/ReferenceSet"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]},{"Oauth2":["https://www.googleapis.com/auth/genomics.readonly"]}],"tags":["referencesets"]},"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}]},"/v1/variants":{"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"post":{"description":"Creates a new variant.","operationId":"genomics.variants.create","requestBody":{"$ref":"#/components/requestBodies/Variant"},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/Variant"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]}],"tags":["variants"]}},"/v1/variants/search":{"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"post":{"description":"Gets a list of variants matching the criteria.\n\nImplements\n[GlobalAllianceApi.searchVariants](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L126).","operationId":"genomics.variants.search","requestBody":{"content":{"application/json":{"schema":{"$ref":"#/components/schemas/SearchVariantsRequest"}}}},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/SearchVariantsResponse"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]},{"Oauth2":["https://www.googleapis.com/auth/genomics.readonly"]}],"tags":["variants"]}},"/v1/variants/{variantId}":{"delete":{"description":"Deletes a variant.","operationId":"genomics.variants.delete","parameters":[{"description":"The ID of the variant to be deleted.","in":"path","name":"variantId","required":true,"schema":{"type":"string"}}],"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/Empty"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]}],"tags":["variants"]},"get":{"description":"Gets a variant by ID.","operationId":"genomics.variants.get","parameters":[{"description":"The ID of the variant.","in":"path","name":"variantId","required":true,"schema":{"type":"string"}}],"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/Variant"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]},{"Oauth2":["https://www.googleapis.com/auth/genomics.readonly"]}],"tags":["variants"]},"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"patch":{"description":"Updates a variant.\n\nThis method supports patch semantics. Returns the modified variant without\nits calls.","operationId":"genomics.variants.patch","parameters":[{"description":"An optional mask specifying which fields to update. At this time, mutable\nfields are names and\ninfo. Acceptable values are \"names\" and\n\"info\". If unspecified, all mutable fields will be updated.","in":"query","name":"updateMask","schema":{"type":"string"}},{"description":"The ID of the variant to be updated.","in":"path","name":"variantId","required":true,"schema":{"type":"string"}}],"requestBody":{"$ref":"#/components/requestBodies/Variant"},"responses":{"200":{"description":"Successful response","content":{"*/*":{"schema":{"$ref":"#/components/schemas/Variant"}}}}},"security":[{"Oauth2":["https://www.googleapis.com/auth/cloud-platform"]},{"Oauth2":["https://www.googleapis.com/auth/genomics"]}],"tags":["variants"]}},"/v1/variants:import":{"parameters":[{"$ref":"#/components/parameters/_.xgafv"},{"$ref":"#/components/parameters/access_token"},{"$ref":"#/components/parameters/alt"},{"$ref":"#/components/parameters/callback"},{"$ref":"#/components/parameters/fields"},{"$ref":"#/components/parameters/key"},{"$ref":"#/components/parameters/oauth_token"},{"$ref":"#/components/parameters/prettyPrint"},{"$ref":"#/components/parameters/quotaUser"},{"$ref":"#/components/parameters/uploadType"},{"$ref":"#/components/parameters/upload_protocol"}],"post":{"descripti