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oncoprintjs

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A data visualization for cancer genomic data.

github.com/cBioPortal/oncoprintjs

cBioPortal/oncoprintjs

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JavaScript

var ga_data = [ { gene: 'GENE0', desc: 'Annotation for GENE0', data: [ { disp_cna: 'hetloss', disp_mut: 'promoter_rec', disp_germ: 'true', sample: 'TCGA-00', }, { disp_mrna: 'up', disp_prot: 'up', sample: 'TCGA-01', }, { disp_cna: 'hetloss', sample: 'TCGA-02', }, { sample: 'TCGA-03', disp_germ: 'true', disp_mut: 'trunc', }, { disp_mut: 'inframe', sample: 'TCGA-04', }, { sample: 'TCGA-05', }, { sample: 'TCGA-06', }, { disp_cna: 'homdel', sample: 'TCGA-07', disp_mrna: 'up', }, { sample: 'TCGA-08', }, { sample: 'TCGA-09', }, { disp_cna: 'amp', sample: 'TCGA-10', disp_mrna: 'up', }, { disp_mrna: 'up', disp_mut: 'inframe', sample: 'TCGA-11', }, { disp_cna: 'homdel', disp_mut: 'promoter', sample: 'TCGA-12', }, { disp_mut: 'promoter', sample: 'TCGA-13', }, { disp_mut: 'promoter', sample: 'TCGA-14', }, { disp_mrna: 'up', sample: 'TCGA-15', }, { disp_mut: 'trunc', sample: 'TCGA-16', }, { disp_mrna: 'down', sample: 'TCGA-17', }, { sample: 'TCGA-18', }, { disp_prot: 'up', sample: 'TCGA-19', }, { disp_prot: 'down', sample: 'TCGA-20', }, { disp_mrna: 'down', sample: 'TCGA-21', }, { disp_cna: 'hetloss', disp_mut: 'trunc', sample: 'TCGA-22', disp_mrna: 'up', }, { sample: 'TCGA-23', }, { sample: 'TCGA-24', }, { disp_mrna: 'up', sample: 'TCGA-25', }, { disp_cna: 'hetloss', sample: 'TCGA-26', }, { sample: 'TCGA-27', }, { disp_mut: 'trunc', sample: 'TCGA-28', }, { sample: 'TCGA-29', }, { sample: 'TCGA-30', }, { sample: 'TCGA-31', }, { disp_cna: 'amp', disp_mut: 'inframe', sample: 'TCGA-32', }, { disp_mut: 'trunc', sample: 'TCGA-33', }, { sample: 'TCGA-34', }, { disp_mut: 'promoter', sample: 'TCGA-35', }, { disp_cna: 'gain', disp_prot: 'down', sample: 'TCGA-36', }, { disp_cna: 'gain', disp_mut: 'inframe', sample: 'TCGA-37', }, { disp_mut: 'inframe', sample: 'TCGA-38', }, { sample: 'TCGA-39', }, { disp_prot: 'down', sample: 'TCGA-40', }, { disp_prot: 'up', sample: 'TCGA-41', }, { disp_mrna: 'down', disp_prot: 'down', sample: 'TCGA-42', }, { disp_prot: 'down', sample: 'TCGA-43', }, { disp_cna: 'gain', sample: 'TCGA-44', }, { disp_cna: 'amp', sample: 'TCGA-45', }, { disp_cna: 'amp', disp_prot: 'up', disp_mut: 'trunc', sample: 'TCGA-46', disp_mrna: 'up', }, { disp_mut: 'promoter', sample: 'TCGA-47', }, { disp_cna: 'amp', sample: 'TCGA-48', }, { disp_prot: 'down', sample: 'TCGA-49', }, ], }, { gene: 'GENE1', desc: 'Annotation for GENE1', data: [ { sample: 'TCGA-00', }, { sample: 'TCGA-01', }, { disp_mut: 'inframe', sample: 'TCGA-02', }, { disp_mrna: 'down', disp_prot: 'up', disp_mut: 'trunc', sample: 'TCGA-03', }, { disp_mut: 'missense', sample: 'TCGA-04', }, { sample: 'TCGA-05', }, { disp_prot: 'up', disp_mut: 'missense', sample: 'TCGA-06', }, { sample: 'TCGA-07', }, { sample: 'TCGA-08', }, { sample: 'TCGA-09', }, { disp_cna: 'homdel', disp_mut: 'missense', sample: 'TCGA-10', }, { disp_prot: 'up', sample: 'TCGA-11', }, { disp_mrna: 'up', sample: 'TCGA-12', }, { disp_cna: 'gain', disp_mut: 'promoter', sample: 'TCGA-13', }, { disp_cna: 'diploid', sample: 'TCGA-14', }, { disp_cna: 'gain', disp_mut: 'promoter', sample: 'TCGA-15', }, { sample: 'TCGA-16', }, { sample: 'TCGA-17', }, { disp_cna: 'diploid', disp_mut: 'trunc', sample: 'TCGA-18', disp_mrna: 'up', }, { disp_mrna: 'up', disp_prot: 'up', sample: 'TCGA-19', }, { disp_prot: 'down', disp_mut: 'missense', sample: 'TCGA-20', }, { disp_cna: 'hetloss', sample: 'TCGA-21', }, { disp_mut: 'inframe', sample: 'TCGA-22', }, { disp_cna: 'amp', sample: 'TCGA-23', }, { sample: 'TCGA-24', }, { disp_mrna: 'down', sample: 'TCGA-25', }, { disp_mrna: 'up', disp_mut: 'inframe', sample: 'TCGA-26', }, { disp_mut: 'inframe', sample: 'TCGA-27', }, { disp_cna: 'homdel', sample: 'TCGA-28', }, { disp_cna: 'gain', sample: 'TCGA-29', }, { sample: 'TCGA-30', }, { disp_mut: 'promoter', sample: 'TCGA-31', }, { disp_prot: 'down', sample: 'TCGA-32', }, { sample: 'TCGA-33', }, { sample: 'TCGA-34', }, { sample: 'TCGA-35', }, { disp_cna: 'amp', disp_prot: 'up', sample: 'TCGA-36', }, { disp_cna: 'amp', disp_prot: 'down', sample: 'TCGA-37', disp_mrna: 'down', }, { sample: 'TCGA-38', }, { sample: 'TCGA-39', }, { sample: 'TCGA-40', }, { disp_cna: 'hetloss', disp_prot: 'up', disp_mut: 'missense', sample: 'TCGA-41', disp_mrna: 'up', }, { disp_mut: 'trunc', sample: 'TCGA-42', }, { disp_cna: 'homdel', disp_mut: 'promoter', sample: 'TCGA-43', }, { sample: 'TCGA-44', }, { disp_cna: 'diploid', disp_mut: 'inframe', sample: 'TCGA-45', disp_mrna: 'up', }, { sample: 'TCGA-46', }, { disp_mut: 'inframe', sample: 'TCGA-47', }, { disp_mrna: 'down', sample: 'TCGA-48', }, { disp_cna: 'diploid', disp_prot: 'up', sample: 'TCGA-49', }, ], }, { gene: 'GENE2', desc: 'Annotation for GENE2', data: [ { disp_cna: 'homdel', sample: 'TCGA-00', }, { sample: 'TCGA-01', }, { sample: 'TCGA-02', }, { disp_cna: 'homdel', disp_prot: 'up', disp_mut: 'promoter', sample: 'TCGA-03', }, { disp_prot: 'up', disp_mut: 'promoter', sample: 'TCGA-04', }, { disp_prot: 'up', disp_mut: 'missense', sample: 'TCGA-05', }, { disp_mrna: 'up', sample: 'TCGA-06', }, { disp_cna: 'gain', sample: 'TCGA-07', }, { disp_mut: 'promoter', sample: 'TCGA-08', }, { disp_prot: 'down', sample: 'TCGA-09', }, { disp_cna: 'gain', disp_mut: 'missense', sample: 'TCGA-10', }, { disp_mrna: 'up', disp_prot: 'up', disp_mut: 'inframe', sample: 'TCGA-11', }, { disp_mrna: 'up', sample: 'TCGA-12', }, { sample: 'TCGA-13', }, { disp_cna: 'gain', disp_mut: 'missense', sample: 'TCGA-14', }, { sample: 'TCGA-15', }, { disp_prot: 'up', disp_mut: 'trunc', sample: 'TCGA-16', }, { disp_mrna: 'up', sample: 'TCGA-17', }, { disp_cna: 'amp', sample: 'TCGA-18', disp_mrna: 'up', }, { sample: 'TCGA-19', }, { disp_cna: 'diploid', disp_prot: 'down', sample: 'TCGA-20', }, { disp_prot: 'down', sample: 'TCGA-21', }, { disp_mrna: 'down', disp_mut: 'missense', sample: 'TCGA-22', }, { disp_mut: 'missense', sample: 'TCGA-23', }, { disp_prot: 'up', sample: 'TCGA-24', }, { disp_prot: 'up', disp_mut: 'inframe', sample: 'TCGA-25', }, { disp_cna: 'gain', disp_mut: 'missense', sample: 'TCGA-26', }, { disp_mrna: 'down', sample: 'TCGA-27', }, { disp_mrna: 'up', disp_prot: 'up', sample: 'TCGA-28', }, { sample: 'TCGA-29', }, { sample: 'TCGA-30', }, { disp_cna: 'homdel', disp_mut: 'promoter', sample: 'TCGA-31', disp_mrna: 'up', }, { disp_prot: 'down', sample: 'TCGA-32', }, { disp_cna: 'homdel', sample: 'TCGA-33', }, { disp_prot: 'up', disp_mut: 'promoter', sample: 'TCGA-34', }, { disp_mut: 'trunc', sample: 'TCGA-35', }, { sample: 'TCGA-36', }, { sample: 'TCGA-37', }, { disp_mrna: 'down', disp_mut: 'missense', sample: 'TCGA-38', }, { disp_mrna: 'up', sample: 'TCGA-39', }, { sample: 'TCGA-40', }, { disp_mut: 'inframe', sample: 'TCGA-41', }, { disp_mut: 'trunc', sample: 'TCGA-42', }, { sample: 'TCGA-43', }, { disp_prot: 'down', sample: 'TCGA-44', }, { disp_cna: 'diploid', sample: 'TCGA-45', disp_mrna: 'down', }, { disp_cna: 'amp', sample: 'TCGA-46', }, { disp_mrna: 'down', sample: 'TCGA-47', }, { sample: 'TCGA-48', }, { disp_cna: 'amp', disp_mut: 'inframe', sample: 'TCGA-49', disp_mrna: 'up', }, ], }, { gene: 'GENE3', desc: 'Annotation for GENE3', data: [ { disp_prot: 'down', disp_mut: 'trunc', sample: 'TCGA-00', }, { disp_cna: 'diploid', sample: 'TCGA-01', }, { sample: 'TCGA-02', }, { disp_prot: 'up', sample: 'TCGA-03', }, { sample: 'TCGA-04', }, { sample: 'TCGA-05', }, { sample: 'TCGA-06', }, { disp_mrna: 'down', sample: 'TCGA-07', }, { sample: 'TCGA-08', }, { sample: 'TCGA-09', }, { disp_cna: 'amp', disp_prot: 'up', disp_mut: 'missense', sample: 'TCGA-10', disp_mrna: 'up', }, { sample: 'TCGA-11', }, { disp_cna: 'diploid', disp_prot: 'down', sample: 'TCGA-12', disp_mrna: 'down', }, { disp_cna: 'gain', sample: 'TCGA-13', }, { disp_mut: 'missense', sample: 'TCGA-14', }, { disp_cna: 'homdel', disp_mut: 'missense', sample: 'TCGA-15', }, { sample: 'TCGA-16', }, { disp_cna: 'amp', sample: 'TCGA-17', }, { disp_mut: 'trunc', sample: 'TCGA-18', }, { sample: 'TCGA-19', }, { sample: 'TCGA-20', }, { disp_cna: 'homdel', sample: 'TCGA-21', }, { disp_mrna: 'up', sample: 'TCGA-22', }, { disp_mut: 'inframe', sample: 'TCGA-23', }, { disp_mut: 'trunc', sample: 'TCGA-24', }, { sample: 'TCGA-25', }, { sample: 'TCGA-26', }, { disp_cna: 'hetloss', sample: 'TCGA-27', }, { disp_prot: 'up', disp_mut: 'trunc', sample: 'TCGA-28', }, { disp_cna: 'homdel', sample: 'TCGA-29', disp_mrna: 'down', }, { sample: 'TCGA-30', }, { disp_cna: 'homdel', disp_mut: 'promoter', sample: 'TCGA-31', }, { sample: 'TCGA-32', }, { sample: 'TCGA-33', }, { disp_cna: 'gain', disp_prot: 'up', sample: 'TCGA-34', }, { sample: 'TCGA-35', }, { disp_mrna: 'up', disp_prot: 'up', disp_mut: 'inframe', sample: 'TCGA-36', }, { disp_mrna: 'up', disp_mut: 'trunc', sample: 'TCGA-37', }, { disp_cna: 'hetloss', sample: 'TCGA-38', }, { disp_mut: 'inframe', sample: 'TCGA-39', }, { sample: 'TCGA-40', }, { disp_mrna: 'up', sample: 'TCGA-41', }, { disp_cna: 'amp', sample: 'TCGA-42', }, { sample: 'TCGA-43', }, { disp_mut: 'promoter', sample: 'TCGA-44', }, { sample: 'TCGA-45', }, { sample: 'TCGA-46', }, { disp_prot: 'down', disp_mut: 'promoter', sample: 'TCGA-47', }, { sample: 'TCGA-48', }, { disp_prot: 'up', disp_mut: 'promoter', sample: 'TCGA-49', }, ], }, { gene: 'GENE4', desc: 'Annotation for GENE4', data: [ { disp_cna: 'diploid', sample: 'TCGA-00', }, { sample: 'TCGA-01', }, { sample: 'TCGA-02', }, { disp_cna: 'amp', disp_mut: 'trunc', sample: 'TCGA-03', }, { disp_mut: 'inframe', sample: 'TCGA-04', }, { sample: 'TCGA-05', }, { disp_cna: 'amp', sample: 'TCGA-06', }, { sample: 'TCGA-07', }, { sample: 'TCGA-08', }, { disp_prot: 'up', sample: 'TCGA-09', }, { disp_mrna: 'down', sample: 'TCGA-10', }, { disp_cna: 'gain', sample: 'TCGA-11', }, { sample: 'TCGA-12', }, { disp_cna: 'amp', sample: 'TCGA-13', }, { sample: 'TCGA-14', }, { disp_prot: 'down', sample: 'TCGA-15', }, { disp_cna: 'homdel', sample: 'TCGA-16', }, { disp_mut: 'promoter', sample: 'TCGA-17', }, { disp_cna: 'homdel', sample: 'TCGA-18', }, { disp_prot: 'up', sample: 'TCGA-19', }, { disp_cna: 'hetloss', sample: 'TCGA-20', }, { sample: 'TCGA-21', }, { disp_mrna: 'down', disp_prot: 'down', sample: 'TCGA-22', }, { disp_mrna: 'up', sample: 'TCGA-23', }, { disp_prot: 'down', sample: 'TCGA-24', }, { sample: 'TCGA-25', }, { disp_cna: 'hetloss', disp_mut: 'promoter', sample: 'TCGA-26', }, { sample: 'TCGA-27', }, { disp_mrna: 'up', disp_prot: 'up', sample: 'TCGA-28', }, { sample: 'TCGA-29', }, { sample: 'TCGA-30', }, { disp_prot: 'up', sample: 'TCGA-31', }, { disp_cna: 'gain', sample: 'TCGA-32', disp_mrna: 'down', }, { disp_cna: 'gain', sample: 'TCGA-33', }, { disp_mrna: 'down', disp_prot: 'up', sample: 'TCGA-34', }, { disp_cna: 'amp', sample: 'TCGA-35', }, { disp_mut: 'missense', sample: 'TCGA-36', }, { sample: 'TCGA-37', }, { disp_prot: 'up', sample: 'TCGA-38', }, { sample: 'TCGA-39', }, { sample: 'TCGA-40', }, { disp_cna: 'gain', sample: 'TCGA-41', }, { disp_cna: 'homdel', sample: 'TCGA-42', disp_mrna: 'down', }, { disp_mrna: 'down', disp_prot: 'up', sample: 'TCGA-43', }, { disp_mut: 'promoter', sample: 'TCGA-44', }, { disp_prot: 'up', sample: 'TCGA-45', }, { sample: 'TCGA-46', }, { disp_mrna: 'down', disp_prot: 'up', disp_mut: 'inframe', sample: 'TCGA-47', }, { disp_cna: 'diploid', disp_mut: 'missense', sample: 'TCGA-48', }, { disp_cna: 'homdel', disp_prot: 'up', sample: 'TCGA-49', disp_mrna: 'up', }, ], }, ];