oncoprintjs/dist/js/oncoprintminimapview.d.ts

A data visualization for cancer genomic data.

/// <reference types="jquery" />
/// <reference types="jstree" />
import OncoprintModel, { ColumnIndex } from './oncoprintmodel';
import OncoprintWebGLCellView from './oncoprintwebglcellview';
export declare type MinimapViewportSpec = {
    left_col: ColumnIndex;
    right_col: ColumnIndex;
    scroll_y_proportion: number;
    zoom_y: number;
};
export default class OncoprintMinimapView {
    private $div;
    private $canvas;
    private $overlay_canvas;
    private handleContextLost;
    private layout_numbers;
    private current_rect;
    private $window_bar;
    private $close_btn;
    private horizontal_zoom;
    private vertical_zoom;
    private ctx;
    private ext;
    private overlay_ctx;
    private pMatrix;
    private mvMatrix;
    private shader_program;
    private resize_hover;
    private rendering_suppressed;
    private visible;
    constructor($div: JQuery, $canvas: JQuery<HTMLCanvasElement>, $overlay_canvas: JQuery<HTMLCanvasElement>, model: OncoprintModel, cell_view: OncoprintWebGLCellView, width: number, height: number, drag_callback: (x: number, y: number) => void, viewport_callback: (vp: MinimapViewportSpec) => void, horz_zoom_callback: (z: number) => void, vert_zoom_callback: (z: number) => void, zoom_to_fit_callback: () => void, close_callback: () => void);
    private colToLeft;
    private get shouldRender();
    private getNewCanvas;
    private getWebGLCanvasContext;
    private ensureWebGLContext;
    private createShaderProgram;
    private createShader;
    private getWebGLContextAndSetUpMatrices;
    private setUpShaders;
    private getTrackBuffers;
    private getSimpleCountBuffer;
    private drawOncoprint;
    private getZoom;
    private drawOverlayRect;
    private drawOncoprintAndOverlayRect;
    moveTrack(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
    addTracks(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
    removeTrack(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
    setHorzZoom(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
    setVertZoom(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
    setZoom(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
    setScroll(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
    setHorzScroll(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
    setVertScroll(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
    setViewport(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
    sort(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
    setTrackData(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
    shareRuleSet(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
    setRuleSet(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
    setIdOrder(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
    setTrackGroupHeader(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
    suppressRendering(): void;
    releaseRendering(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
    hideIds(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
    setMinimapVisible(visible: boolean, model?: OncoprintModel, cell_view?: OncoprintWebGLCellView): void;
    setWindowPosition(x: number, y: number): void;
    setWidth(w: number, model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
}