molstar
Version:
A comprehensive macromolecular library.
48 lines (47 loc) • 2.02 kB
JavaScript
;
/**
* Copyright (c) 2020-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author Alexander Rose <alexander.rose@weirdbyte.de>
*/
Object.defineProperty(exports, "__esModule", { value: true });
exports.BasicSchema = void 0;
exports.createBasic = createBasic;
const mmcif_1 = require("../../../mol-io/reader/cif/schema/mmcif");
const db_1 = require("../../../mol-data/db");
const mmcif_extras_1 = require("../../../mol-io/reader/cif/schema/mmcif-extras");
const util_1 = require("./util");
exports.BasicSchema = {
entry: mmcif_1.mmCIF_Schema.entry,
struct: mmcif_1.mmCIF_Schema.struct,
struct_asym: mmcif_1.mmCIF_Schema.struct_asym,
ihm_model_list: mmcif_1.mmCIF_Schema.ihm_model_list,
ihm_model_group: mmcif_1.mmCIF_Schema.ihm_model_group,
ihm_model_group_link: mmcif_1.mmCIF_Schema.ihm_model_group_link,
entity: mmcif_1.mmCIF_Schema.entity,
entity_poly: mmcif_1.mmCIF_Schema.entity_poly,
entity_poly_seq: mmcif_1.mmCIF_Schema.entity_poly_seq,
pdbx_entity_branch: mmcif_1.mmCIF_Schema.pdbx_entity_branch,
chem_comp: mmcif_extras_1.mmCIF_chemComp_schema,
pdbx_chem_comp_identifier: mmcif_1.mmCIF_Schema.pdbx_chem_comp_identifier,
atom_site: mmcif_1.mmCIF_Schema.atom_site,
ihm_sphere_obj_site: mmcif_1.mmCIF_Schema.ihm_sphere_obj_site,
ihm_gaussian_obj_site: mmcif_1.mmCIF_Schema.ihm_gaussian_obj_site,
pdbx_unobs_or_zero_occ_residues: mmcif_1.mmCIF_Schema.pdbx_unobs_or_zero_occ_residues,
pdbx_molecule: mmcif_1.mmCIF_Schema.pdbx_molecule,
};
function createBasic(data, normalize = false) {
const basic = Object.create(null);
for (const name of Object.keys(exports.BasicSchema)) {
if (name in data) {
basic[name] = data[name];
}
else {
basic[name] = db_1.Table.ofUndefinedColumns(exports.BasicSchema[name], 0);
}
}
if (normalize) {
basic.atom_site = (0, util_1.getNormalizedAtomSite)(basic.atom_site);
}
return basic;
}