molstar
Version:
A comprehensive macromolecular library.
100 lines (99 loc) • 5.57 kB
TypeScript
/**
* Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author Alexander Rose <alexander.rose@weirdbyte.de>
*/
import { ParamDefinition as PD } from '../../mol-util/param-definition';
import { PluginBehavior } from '../../mol-plugin/behavior/behavior';
import { PluginStateObject } from '../../mol-plugin-state/objects';
import { PluginConfigItem } from '../../mol-plugin/config';
import { PluginContext } from '../../mol-plugin/context';
import { StateTransformer, StateAction, StateObject, StateTransform, StateObjectRef } from '../../mol-state';
import { StructureRepresentationPresetProvider } from '../../mol-plugin-state/builder/structure/representation-preset';
export declare const AssemblySymmetry: StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, {
autoAttach: boolean;
}>;
export declare const InitAssemblySymmetry3D: StateAction<PluginStateObject.Molecule.Structure, void, PD.Normalize<{
serverType: "rcsb" | "pdbe";
serverUrl: string;
}>>;
export { AssemblySymmetry3D };
type AssemblySymmetry3D = typeof AssemblySymmetry3D;
declare const AssemblySymmetry3D: StateTransformer<PluginStateObject.Molecule.Structure, PluginStateObject.Shape.Representation3D, PD.Normalize<{
visuals: ("axes" | "cage")[];
cageColor: import("../../mol-util/color").Color;
scale: number;
doubleSided: boolean;
flipSided: boolean;
flatShaded: boolean;
ignoreLight: boolean;
celShaded: boolean;
xrayShaded: boolean | "inverted";
transparentBackfaces: "off" | "on" | "opaque";
bumpFrequency: number;
bumpAmplitude: number;
alpha: number;
quality: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
material: PD.Normalize<{
metalness: number;
roughness: number;
bumpiness: number;
}>;
clip: PD.Normalize<{
variant: /*elided*/ any;
objects: /*elided*/ any;
}>;
emissive: number;
density: number;
instanceGranularity: boolean;
lod: import("../../mol-math/linear-algebra").Vec3;
cellSize: number;
batchSize: number;
axesColor: PD.NamedParams<PD.Normalize<{
colorValue: /*elided*/ any;
}>, "uniform"> | PD.NamedParams<PD.Normalize<unknown>, "byOrder">;
}>>;
export declare const AssemblySymmetryPreset: StructureRepresentationPresetProvider<{
serverType: "rcsb" | "pdbe";
serverUrl: string;
ignoreHydrogens: boolean | undefined;
ignoreHydrogensVariant: "all" | "non-polar" | undefined;
ignoreLight: boolean | undefined;
quality: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest" | undefined;
theme: PD.Normalize<{
globalName: /*elided*/ any;
globalColorParams: /*elided*/ any;
carbonColor: /*elided*/ any;
symmetryColor: /*elided*/ any;
symmetryColorParams: /*elided*/ any;
focus: /*elided*/ any;
}> | undefined;
}, {
components?: undefined;
representations?: undefined;
} | {
components: {
polymer: import("../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<StateObject<any, StateObject.Type<any>>, StateObject<any, StateObject.Type<any>>, any>> | undefined;
} | {
all: import("../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, StateTransformer<StateObject<any, StateObject.Type<any>>, StateObject<any, StateObject.Type<any>>, any>> | undefined;
branched: undefined;
} | undefined;
representations: {
assemblySymmetry: import("../../mol-state").StateObjectSelector<PluginStateObject.Shape.Representation3D, StateTransformer<StateObject<any, StateObject.Type<any>>, StateObject<any, StateObject.Type<any>>, any>>;
} | {
assemblySymmetry: import("../../mol-state").StateObjectSelector<PluginStateObject.Shape.Representation3D, StateTransformer<StateObject<any, StateObject.Type<any>>, StateObject<any, StateObject.Type<any>>, any>>;
polymer: import("../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<StateObject<any, StateObject.Type<any>>, StateObject<any, StateObject.Type<any>>, any>>;
} | {
assemblySymmetry: import("../../mol-state").StateObjectSelector<PluginStateObject.Shape.Representation3D, StateTransformer<StateObject<any, StateObject.Type<any>>, StateObject<any, StateObject.Type<any>>, any>>;
all: import("../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, StateTransformer<StateObject<any, StateObject.Type<any>>, StateObject<any, StateObject.Type<any>>, any>>;
};
}>;
export declare function tryCreateAssemblySymmetry(plugin: PluginContext, structure: StateObjectRef<PluginStateObject.Molecule.Structure>, params?: StateTransformer.Params<AssemblySymmetry3D>, initialState?: Partial<StateTransform.State>): Promise<import("../../mol-state").StateObjectSelector<PluginStateObject.Shape.Representation3D, StateTransformer<StateObject<any, StateObject.Type<any>>, StateObject<any, StateObject.Type<any>>, any>>>;
export declare const AssemblySymmetryConfig: {
DefaultServerType: PluginConfigItem<"rcsb" | "pdbe">;
DefaultServerUrl: PluginConfigItem<string>;
ApplyColors: PluginConfigItem<boolean>;
};
export declare function getAssemblySymmetryConfig(plugin: PluginContext): {
[key in keyof typeof AssemblySymmetryConfig]: NonNullable<typeof AssemblySymmetryConfig[key]['defaultValue']>;
};