molstar
Version:
A comprehensive macromolecular library.
48 lines (47 loc) • 1.9 kB
TypeScript
/**
* Copyright (c) 2017-2025 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
* @author Alexander Rose <alexander.rose@weirdbyte.de>
* @author Sebastian Bittrich <sebastian.bittrich@rcsb.org>
*/
import { Model } from '../../mol-model/structure/model/model';
import { Task } from '../../mol-task';
import { ModelFormat } from '../format';
import { CifFrame, CifFile } from '../../mol-io/reader/cif';
import { mmCIF_Database } from '../../mol-io/reader/cif/schema/mmcif';
import { Trajectory } from '../../mol-model/structure';
import { CCD_Database } from '../../mol-io/reader/cif/schema/ccd';
export { MmcifFormat };
type MmcifFormat = ModelFormat<MmcifFormat.Data>;
declare namespace MmcifFormat {
type Data = {
db: mmCIF_Database;
frame: CifFrame;
file?: CifFile;
/**
* Original source format. Some formats, including PDB, are converted
* to mmCIF before further processing.
*/
source?: ModelFormat;
};
function is(x?: ModelFormat): x is MmcifFormat;
function fromFrame(frame: CifFrame, db?: mmCIF_Database, source?: ModelFormat, file?: CifFile): MmcifFormat;
}
export declare function trajectoryFromMmCIF(frame: CifFrame, file?: CifFile): Task<Trajectory>;
export { CCDFormat };
type CCDFormat = ModelFormat<CCDFormat.Data>;
declare namespace CCDFormat {
type Data = {
db: CCD_Database;
frame: CifFrame;
};
type CoordinateType = 'ideal' | 'model';
const CoordinateType: {
get(model: Model): CoordinateType | undefined;
set(model: Model, type: CoordinateType): CoordinateType;
};
function is(x?: ModelFormat): x is CCDFormat;
function fromFrame(frame: CifFrame, db?: CCD_Database): CCDFormat;
}
export declare function trajectoryFromCCD(frame: CifFrame): Task<Trajectory>;