molstar
Version:
A comprehensive macromolecular library.
147 lines (146 loc) • 4.06 kB
TypeScript
/**
* Copyright (c) 2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author Dušan Veľký <dvelky@mail.muni.cz>
*/
import { WebGLContext } from '../../../mol-gl/webgl/context';
import { PluginStateObject } from '../../../mol-plugin-state/objects';
import { ParamDefinition as PD } from '../../../mol-util/param-definition';
export interface Profile {
Charge: number;
Radius: number;
FreeRadius: number;
T: number;
Distance: number;
X: number;
Y: number;
Z: number;
}
export interface Layerweightedproperties {
Hydrophobicity: number;
Hydropathy: number;
Polarity: number;
Mutability: number;
}
export interface LayerGeometry {
MinRadius: number;
MinFreeRadius: number;
StartDistance: number;
EndDistance: number;
LocalMinimum: boolean;
Bottleneck: boolean;
bottleneck: boolean;
}
export interface Properties {
Charge: number;
NumPositives: number;
NumNegatives: number;
Hydrophobicity: number;
Hydropathy: number;
Polarity: number;
Mutability: number;
}
export interface LayersInfo {
LayerGeometry: LayerGeometry;
Residues: string[];
FlowIndices: string[];
Properties: Properties;
}
export interface Layers {
ResidueFlow: string[];
HetResidues: any[];
LayerWeightedProperties: Layerweightedproperties;
LayersInfo: LayersInfo[];
}
export interface TunnelDB {
Type: string;
Id: string;
Cavity: string;
Auto: boolean;
Properties: Properties;
Profile: Profile[];
Layers: Layers;
}
export interface ChannelsDBdata {
'CSATunnels_MOLE': TunnelDB[];
'CSATunnels_Caver': TunnelDB[];
'ReviewedChannels_MOLE': TunnelDB[];
'ReviewedChannels_Caver': TunnelDB[];
'CofactorTunnels_MOLE': TunnelDB[];
'CofactorTunnels_Caver': TunnelDB[];
'TransmembranePores_MOLE': TunnelDB[];
'TransmembranePores_Caver': TunnelDB[];
'ProcognateTunnels_MOLE': TunnelDB[];
'ProcognateTunnels_Caver': TunnelDB[];
'AlphaFillTunnels_MOLE': TunnelDB[];
'AlphaFillTunnels_Caver': TunnelDB[];
}
export interface ChannelsCache {
Channels: ChannelsDBdata;
}
export interface Tunnel {
data: Profile[];
props: {
highlight_label?: string;
type?: string;
id?: string;
label?: string;
description?: string;
};
}
export declare const TunnelShapeParams: {
webgl: PD.Value<WebGLContext | null>;
colorTheme: PD.Color;
visual: PD.Mapped<PD.NamedParams<PD.Normalize<{
resolution: number;
}>, "spheres"> | PD.NamedParams<PD.Normalize<{
resolution: number;
}>, "mesh">>;
samplingRate: PD.Numeric;
showRadii: PD.BooleanParam;
};
declare const TunnelStateObject_base: {
new (data: {
tunnel: Tunnel;
}, props?: {
label: string;
description?: string;
} | undefined): {
id: import("../../../mol-util").UUID;
type: PluginStateObject.TypeInfo;
label: string;
description?: string;
data: {
tunnel: Tunnel;
};
};
type: PluginStateObject.TypeInfo;
is(obj?: import("../../../mol-state").StateObject): obj is import("../../../mol-state").StateObject<{
tunnel: Tunnel;
}, PluginStateObject.TypeInfo>;
};
export declare class TunnelStateObject extends TunnelStateObject_base {
}
declare const TunnelsStateObject_base: {
new (data: {
tunnels: Tunnel[];
}, props?: {
label: string;
description?: string;
} | undefined): {
id: import("../../../mol-util").UUID;
type: PluginStateObject.TypeInfo;
label: string;
description?: string;
data: {
tunnels: Tunnel[];
};
};
type: PluginStateObject.TypeInfo;
is(obj?: import("../../../mol-state").StateObject): obj is import("../../../mol-state").StateObject<{
tunnels: Tunnel[];
}, PluginStateObject.TypeInfo>;
};
export declare class TunnelsStateObject extends TunnelsStateObject_base {
}
export {};