molstar
Version:
A comprehensive macromolecular library.
93 lines (92 loc) • 4.21 kB
TypeScript
/**
* Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author Michal Malý <michal.maly@ibt.cas.cz>
* @author Jiří Černý <jiri.cerny@ibt.cas.cz>
*/
import { DnatcoTypes } from './types';
import { Column, Table } from '../../mol-data/db';
import { Model } from '../../mol-model/structure';
import { CustomProperty } from '../../mol-model-props/common/custom-property';
import { PropertyWrapper } from '../../mol-model-props/common/wrapper';
import { ParamDefinition as PD } from '../../mol-util/param-definition';
export type DnatcoSteps = PropertyWrapper<DnatcoTypes.Steps | undefined>;
export declare const DnatcoParams: {};
export type DnatcoParams = typeof DnatcoParams;
export type DnatcoProps = PD.Values<DnatcoParams>;
export declare namespace Dnatco {
const Schema: {
ndb_struct_ntc_step: {
id: Column.Schema.Int;
name: Column.Schema.Str;
PDB_model_number: Column.Schema.Int;
label_entity_id_1: Column.Schema.Int;
label_asym_id_1: Column.Schema.Str;
label_seq_id_1: Column.Schema.Int;
label_comp_id_1: Column.Schema.Str;
label_alt_id_1: Column.Schema.Str;
label_entity_id_2: Column.Schema.Int;
label_asym_id_2: Column.Schema.Str;
label_seq_id_2: Column.Schema.Int;
label_comp_id_2: Column.Schema.Str;
label_alt_id_2: Column.Schema.Str;
auth_asym_id_1: Column.Schema.Str;
auth_seq_id_1: Column.Schema.Int;
auth_asym_id_2: Column.Schema.Str;
auth_seq_id_2: Column.Schema.Int;
PDB_ins_code_1: Column.Schema.Str;
PDB_ins_code_2: Column.Schema.Str;
};
ndb_struct_ntc_step_summary: {
step_id: Column.Schema.Int;
assigned_CANA: Column.Schema.Str;
assigned_NtC: Column.Schema.Str;
confal_score: Column.Schema.Int;
euclidean_distance_NtC_ideal: Column.Schema.Float;
cartesian_rmsd_closest_NtC_representative: Column.Schema.Float;
closest_CANA: Column.Schema.Str;
closest_NtC: Column.Schema.Str;
closest_step_golden: Column.Schema.Str;
};
};
type Schema = typeof Schema;
function getStepsFromCif(model: Model, cifSteps: Table<typeof Dnatco.Schema.ndb_struct_ntc_step>, stepsSummary: StepsSummaryTable): DnatcoTypes.Steps;
function fromCif(ctx: CustomProperty.Context, model: Model, props: DnatcoProps): Promise<CustomProperty.Data<DnatcoSteps>>;
function getCifData(model: Model): {
steps: Table<{
id: Column.Schema.Int;
name: Column.Schema.Str;
PDB_model_number: Column.Schema.Int;
label_entity_id_1: Column.Schema.Int;
label_asym_id_1: Column.Schema.Str;
label_seq_id_1: Column.Schema.Int;
label_comp_id_1: Column.Schema.Str;
label_alt_id_1: Column.Schema.Str;
label_entity_id_2: Column.Schema.Int;
label_asym_id_2: Column.Schema.Str;
label_seq_id_2: Column.Schema.Int;
label_comp_id_2: Column.Schema.Str;
label_alt_id_2: Column.Schema.Str;
auth_asym_id_1: Column.Schema.Str;
auth_seq_id_1: Column.Schema.Int;
auth_asym_id_2: Column.Schema.Str;
auth_seq_id_2: Column.Schema.Int;
PDB_ins_code_1: Column.Schema.Str;
PDB_ins_code_2: Column.Schema.Str;
}>;
stepsSummary: Table<{
step_id: Column.Schema.Int;
assigned_CANA: Column.Schema.Str;
assigned_NtC: Column.Schema.Str;
confal_score: Column.Schema.Int;
euclidean_distance_NtC_ideal: Column.Schema.Float;
cartesian_rmsd_closest_NtC_representative: Column.Schema.Float;
closest_CANA: Column.Schema.Str;
closest_NtC: Column.Schema.Str;
closest_step_golden: Column.Schema.Str;
}>;
} | undefined;
function isApplicable(model?: Model): boolean;
}
type StepsSummaryTable = Table<typeof Dnatco.Schema.ndb_struct_ntc_step_summary>;
export {};