molstar
Version:
A comprehensive macromolecular library.
143 lines (142 loc) • 5.86 kB
JavaScript
;
/**
* Copyright (c) 2019-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author Alexander Rose <alexander.rose@weirdbyte.de>
*/
Object.defineProperty(exports, "__esModule", { value: true });
exports.Overpaint = Overpaint;
const loci_1 = require("../mol-model/loci");
const color_1 = require("../mol-util/color");
const structure_1 = require("../mol-model/structure");
const script_1 = require("../mol-script/script");
function Overpaint(kind, layers) {
return { kind, layers };
}
(function (Overpaint) {
Overpaint.Empty = { kind: 'empty-loci', layers: [] };
function areEqual(oA, oB) {
if (oA.layers.length === 0 && oB.layers.length === 0)
return true;
if (oA.layers.length !== oB.layers.length)
return false;
for (let i = 0, il = oA.layers.length; i < il; ++i) {
if (oA.layers[i].clear !== oB.layers[i].clear)
return false;
if (oA.layers[i].color !== oB.layers[i].color)
return false;
if (!loci_1.Loci.areEqual(oA.layers[i].loci, oB.layers[i].loci))
return false;
}
return true;
}
Overpaint.areEqual = areEqual;
function isEmpty(overpaint) {
return overpaint.layers.length === 0;
}
Overpaint.isEmpty = isEmpty;
function remap(overpaint, structure) {
if (overpaint.kind === 'element-loci') {
const layers = [];
for (const layer of overpaint.layers) {
let { loci, color, clear } = layer;
loci = structure_1.StructureElement.Loci.remap(loci, structure);
if (!structure_1.StructureElement.Loci.isEmpty(loci)) {
layers.push({ loci, color, clear });
}
}
return { kind: 'element-loci', layers };
}
else {
return overpaint;
}
}
Overpaint.remap = remap;
function merge(overpaint) {
if (isEmpty(overpaint))
return overpaint;
if (overpaint.kind === 'element-loci') {
const { structure } = overpaint.layers[0].loci;
const map = new Map();
let shadowed = structure_1.StructureElement.Loci.none(structure);
for (let i = 0, il = overpaint.layers.length; i < il; ++i) {
let { loci, color, clear } = overpaint.layers[il - i - 1]; // process from end
loci = structure_1.StructureElement.Loci.subtract(loci, shadowed);
shadowed = structure_1.StructureElement.Loci.union(loci, shadowed);
if (!structure_1.StructureElement.Loci.isEmpty(loci)) {
const colorOrClear = clear ? -1 : color;
if (map.has(colorOrClear)) {
loci = structure_1.StructureElement.Loci.union(loci, map.get(colorOrClear));
}
map.set(colorOrClear, loci);
}
}
const layers = [];
map.forEach((loci, colorOrClear) => {
const clear = colorOrClear === -1;
const color = clear ? (0, color_1.Color)(0) : colorOrClear;
layers.push({ loci, color, clear });
});
return { kind: 'element-loci', layers };
}
else {
return overpaint;
}
}
Overpaint.merge = merge;
function filter(overpaint, filter) {
if (isEmpty(overpaint))
return overpaint;
if (overpaint.kind === 'element-loci') {
const { structure } = overpaint.layers[0].loci;
const layers = [];
for (const layer of overpaint.layers) {
let { loci, color, clear } = layer;
// filter by first map to the `filter` structure and
// then map back to the original structure of the overpaint loci
const filtered = structure_1.StructureElement.Loci.remap(loci, filter);
loci = structure_1.StructureElement.Loci.remap(filtered, structure);
if (!structure_1.StructureElement.Loci.isEmpty(loci)) {
layers.push({ loci, color, clear });
}
}
return { kind: 'element-loci', layers };
}
else {
return overpaint;
}
}
Overpaint.filter = filter;
function ofScript(scriptLayers, structure) {
const layers = [];
for (let i = 0, il = scriptLayers.length; i < il; ++i) {
const { script, color, clear } = scriptLayers[i];
const loci = script_1.Script.toLoci(script, structure);
if (!structure_1.StructureElement.Loci.isEmpty(loci)) {
layers.push({ loci, color, clear });
}
}
return { kind: 'element-loci', layers };
}
Overpaint.ofScript = ofScript;
function ofBundle(bundleLayers, structure) {
const layers = [];
for (let i = 0, il = bundleLayers.length; i < il; ++i) {
const { bundle, color, clear } = bundleLayers[i];
const loci = structure_1.StructureElement.Bundle.toLoci(bundle, structure.root);
layers.push({ loci, color, clear });
}
return { kind: 'element-loci', layers };
}
Overpaint.ofBundle = ofBundle;
function toBundle(overpaint) {
const layers = [];
for (let i = 0, il = overpaint.layers.length; i < il; ++i) {
const { loci, color, clear } = overpaint.layers[i];
const bundle = structure_1.StructureElement.Bundle.fromLoci(loci);
layers.push({ bundle, color, clear });
}
return { kind: 'element-loci', layers };
}
Overpaint.toBundle = toBundle;
})(Overpaint || (exports.Overpaint = Overpaint = {}));