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molstar

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A comprehensive macromolecular library.

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"use strict"; /** * Copyright (c) 2019-2022 mol* contributors, licensed under MIT, See LICENSE file for more info. * * @author Alexander Rose <alexander.rose@weirdbyte.de> */ Object.defineProperty(exports, "__esModule", { value: true }); exports.MolecularSurfaceWireframeParams = void 0; exports.MolecularSurfaceWireframeVisual = MolecularSurfaceWireframeVisual; const param_definition_1 = require("../../../mol-util/param-definition"); const units_visual_1 = require("../units-visual"); const molecular_surface_1 = require("../../../mol-math/geometry/molecular-surface"); const lines_1 = require("../../../mol-geo/geometry/lines/lines"); const molecular_surface_2 = require("./util/molecular-surface"); const algorithm_1 = require("../../../mol-geo/util/marching-cubes/algorithm"); const element_1 = require("./util/element"); const common_1 = require("./util/common"); const geometry_1 = require("../../../mol-math/geometry"); exports.MolecularSurfaceWireframeParams = { ...units_visual_1.UnitsLinesParams, ...molecular_surface_1.MolecularSurfaceCalculationParams, ...common_1.CommonSurfaceParams, sizeFactor: param_definition_1.ParamDefinition.Numeric(1.5, { min: 0, max: 10, step: 0.1 }), }; // async function createMolecularSurfaceWireframe(ctx, unit, structure, theme, props, lines) { const { transform, field, idField, maxRadius } = await (0, molecular_surface_2.computeUnitMolecularSurface)(structure, unit, theme.size, props).runInContext(ctx.runtime); const params = { isoLevel: props.probeRadius, scalarField: field, idField }; const wireframe = await (0, algorithm_1.computeMarchingCubesLines)(params, lines).runAsChild(ctx.runtime); lines_1.Lines.transform(wireframe, transform); const sphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), unit.boundary.sphere, maxRadius); wireframe.setBoundingSphere(sphere); return wireframe; } function MolecularSurfaceWireframeVisual(materialId) { return (0, units_visual_1.UnitsLinesVisual)({ defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.MolecularSurfaceWireframeParams), createGeometry: createMolecularSurfaceWireframe, createLocationIterator: element_1.ElementIterator.fromGroup, getLoci: element_1.getElementLoci, eachLocation: element_1.eachElement, setUpdateState: (state, newProps, currentProps) => { if (newProps.resolution !== currentProps.resolution) state.createGeometry = true; if (newProps.probeRadius !== currentProps.probeRadius) state.createGeometry = true; if (newProps.probePositions !== currentProps.probePositions) state.createGeometry = true; if (newProps.ignoreHydrogens !== currentProps.ignoreHydrogens) state.createGeometry = true; if (newProps.ignoreHydrogensVariant !== currentProps.ignoreHydrogensVariant) state.createGeometry = true; if (newProps.includeParent !== currentProps.includeParent) state.createGeometry = true; } }, materialId); }