molstar
Version:
A comprehensive macromolecular library.
130 lines (129 loc) • 6.14 kB
JavaScript
"use strict";
/**
* Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
Object.defineProperty(exports, "__esModule", { value: true });
exports.StructureRepresentationBuilder = void 0;
const util_1 = require("../../../mol-data/util");
const mol_state_1 = require("../../../mol-state");
const mol_task_1 = require("../../../mol-task");
const debug_1 = require("../../../mol-util/debug");
const object_1 = require("../../../mol-util/object");
const param_definition_1 = require("../../../mol-util/param-definition");
const structure_representation_params_1 = require("../../helpers/structure-representation-params");
const representation_1 = require("../../transforms/representation");
const representation_preset_1 = require("./representation-preset");
const array_1 = require("../../../mol-util/array");
const config_1 = require("../../../mol-plugin/config");
class StructureRepresentationBuilder {
get dataState() { return this.plugin.state.data; }
resolveProvider(ref) {
var _a;
return typeof ref === 'string'
? (_a = representation_preset_1.PresetStructureRepresentations[ref]) !== null && _a !== void 0 ? _a : (0, util_1.arrayFind)(this._providers, p => p.id === ref)
: ref;
}
hasPreset(s) {
for (const p of this._providers) {
if (!p.isApplicable || p.isApplicable(s, this.plugin))
return true;
}
return false;
}
get providers() { return this._providers; }
getPresets(s) {
if (!s)
return this.providers;
const ret = [];
for (const p of this._providers) {
if (p.isApplicable && !p.isApplicable(s, this.plugin))
continue;
ret.push(p);
}
return ret;
}
getPresetSelect(s) {
const options = [];
for (const p of this._providers) {
if (s && p.isApplicable && !p.isApplicable(s, this.plugin))
continue;
options.push([p.id, p.display.name, p.display.group]);
}
return param_definition_1.ParamDefinition.Select('auto', options);
}
getPresetsWithOptions(s) {
const options = [];
const map = Object.create(null);
for (const p of this._providers) {
if (p.isApplicable && !p.isApplicable(s, this.plugin))
continue;
options.push([p.id, p.display.name]);
map[p.id] = p.params ? param_definition_1.ParamDefinition.Group(p.params(s, this.plugin)) : param_definition_1.ParamDefinition.EmptyGroup();
}
if (options.length === 0)
return param_definition_1.ParamDefinition.MappedStatic('', { '': param_definition_1.ParamDefinition.EmptyGroup() });
return param_definition_1.ParamDefinition.MappedStatic(options[0][0], map, { options });
}
registerPreset(provider) {
if (this.providerMap.has(provider.id)) {
throw new Error(`Representation provider with id '${provider.id}' already registered.`);
}
this._providers.push(provider);
this.providerMap.set(provider.id, provider);
}
unregisterPreset(provider) {
this.providerMap.delete(provider.id);
(0, array_1.arrayRemoveInPlace)(this._providers, provider);
}
applyPreset(parent, providerRef, params) {
var _a;
const provider = this.resolveProvider(providerRef);
if (!provider)
return;
const state = this.plugin.state.data;
const cell = mol_state_1.StateObjectRef.resolveAndCheck(state, parent);
if (!cell) {
if (!debug_1.isProductionMode)
console.warn(`Applying structure repr. provider to bad cell.`);
return;
}
const pd = ((_a = provider.params) === null || _a === void 0 ? void 0 : _a.call(provider, cell.obj, this.plugin)) || {};
let prms = params || (provider.params
? param_definition_1.ParamDefinition.getDefaultValues(pd)
: {});
const defaults = this.plugin.config.get(config_1.PluginConfig.Structure.DefaultRepresentationPresetParams);
prms = param_definition_1.ParamDefinition.merge(pd, defaults, prms);
const task = mol_task_1.Task.create(`${provider.display.name}`, () => provider.apply(cell, prms, this.plugin));
return this.plugin.runTask(task);
}
async addRepresentation(structure, props, options) {
const repr = this.dataState.build();
const selector = this.buildRepresentation(repr, structure, props, options);
if (!selector)
return;
await repr.commit();
return selector;
}
buildRepresentation(builder, structure, props, options) {
var _a, _b;
if (!structure)
return;
const data = (_b = (_a = mol_state_1.StateObjectRef.resolveAndCheck(this.dataState, structure)) === null || _a === void 0 ? void 0 : _a.obj) === null || _b === void 0 ? void 0 : _b.data;
if (!data)
return;
const params = (0, structure_representation_params_1.createStructureRepresentationParams)(this.plugin, data, props);
return (options === null || options === void 0 ? void 0 : options.tag)
? builder.to(structure).applyOrUpdateTagged(options.tag, representation_1.StructureRepresentation3D, params, { state: options === null || options === void 0 ? void 0 : options.initialState }).selector
: builder.to(structure).apply(representation_1.StructureRepresentation3D, params, { state: options === null || options === void 0 ? void 0 : options.initialState }).selector;
}
constructor(plugin) {
this.plugin = plugin;
this._providers = [];
this.providerMap = new Map();
this.defaultProvider = representation_preset_1.PresetStructureRepresentations.auto;
(0, object_1.objectForEach)(representation_preset_1.PresetStructureRepresentations, r => this.registerPreset(r));
}
}
exports.StructureRepresentationBuilder = StructureRepresentationBuilder;