molstar
Version:
A comprehensive macromolecular library.
71 lines (70 loc) • 3.47 kB
JavaScript
;
/**
* Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
Object.defineProperty(exports, "__esModule", { value: true });
exports.PDBeStructureQualityReport = void 0;
const int_1 = require("../../../mol-data/int");
const prop_1 = require("./prop");
const color_1 = require("./color");
const structure_1 = require("../../../mol-model/structure");
const param_definition_1 = require("../../../mol-util/param-definition");
const behavior_1 = require("../../../mol-plugin/behavior/behavior");
exports.PDBeStructureQualityReport = behavior_1.PluginBehavior.create({
name: 'pdbe-structure-quality-report-prop',
category: 'custom-props',
display: {
name: 'Structure Quality Report',
description: 'Data from wwPDB Validation Report, obtained via PDBe.'
},
ctor: class extends behavior_1.PluginBehavior.Handler {
constructor() {
super(...arguments);
this.provider = prop_1.StructureQualityReportProvider;
this.labelPDBeValidation = {
label: (loci) => {
if (!this.params.showTooltip)
return void 0;
switch (loci.kind) {
case 'element-loci':
if (loci.elements.length === 0)
return void 0;
const e = loci.elements[0];
const u = e.unit;
if (!u.model.customProperties.hasReference(prop_1.StructureQualityReportProvider.descriptor))
return void 0;
const se = structure_1.StructureElement.Location.create(loci.structure, u, u.elements[int_1.OrderedSet.getAt(e.indices, 0)]);
const issues = prop_1.StructureQualityReport.getIssues(se);
if (issues.length === 0)
return 'Validation: No Issues';
return `Validation: ${issues.join(', ')}`;
default: return void 0;
}
}
};
}
register() {
this.ctx.customModelProperties.register(this.provider, this.params.autoAttach);
this.ctx.managers.lociLabels.addProvider(this.labelPDBeValidation);
this.ctx.representation.structure.themes.colorThemeRegistry.add(color_1.StructureQualityReportColorThemeProvider);
}
update(p) {
const updated = this.params.autoAttach !== p.autoAttach;
this.params.autoAttach = p.autoAttach;
this.params.showTooltip = p.showTooltip;
this.ctx.customModelProperties.setDefaultAutoAttach(this.provider.descriptor.name, this.params.autoAttach);
return updated;
}
unregister() {
this.ctx.customModelProperties.unregister(prop_1.StructureQualityReportProvider.descriptor.name);
this.ctx.managers.lociLabels.removeProvider(this.labelPDBeValidation);
this.ctx.representation.structure.themes.colorThemeRegistry.remove(color_1.StructureQualityReportColorThemeProvider);
}
},
params: () => ({
autoAttach: param_definition_1.ParamDefinition.Boolean(false),
showTooltip: param_definition_1.ParamDefinition.Boolean(true)
})
});