molstar
Version:
A comprehensive macromolecular library.
79 lines (78 loc) • 2.63 kB
JavaScript
;
/**
* Copyright (c) 2018-2019 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* Taken/adapted from DensityServer (https://github.com/dsehnal/DensityServer)
*
* @author David Sehnal <david.sehnal@gmail.com>
* @author Alexander Rose <alexander.rose@weirdbyte.de>
*/
Object.defineProperty(exports, "__esModule", { value: true });
var tslib_1 = require("tslib");
var fs = tslib_1.__importStar(require("fs"));
var config_1 = require("./config");
var LocalApi = tslib_1.__importStar(require("./server/local-api"));
var config = (0, config_1.configureLocal)();
if (config.jobsTemplate) {
var exampleJobs = [{
source: {
filename: "g:/test/mdb/xray-1tqn.mdb",
name: 'xray',
id: '1tqn',
},
query: {
kind: 'box',
space: 'cartesian',
bottomLeft: [-42.996, -64.169, -45.335],
topRight: [8.768, 15.316, 21.599]
},
params: {
forcedSamplingLevel: 2,
asBinary: true
},
outputFolder: 'g:/test/local-test'
}, {
source: {
filename: "g:/test/mdb/emd-8116.mdb",
name: 'em',
id: '8116',
},
query: {
kind: 'cell'
},
params: {
detail: 4,
asBinary: true
},
outputFolder: 'g:/test/local-test',
outputFilename: '8116_cell.bcif'
}];
console.log(JSON.stringify(exampleJobs, null, 2));
process.exit();
}
function run() {
return tslib_1.__awaiter(this, void 0, void 0, function () {
var jobs;
return tslib_1.__generator(this, function (_a) {
switch (_a.label) {
case 0:
try {
if (!config.jobs) {
throw new Error("Please provide 'jobs' argument. See [-h] for help.");
}
jobs = JSON.parse(fs.readFileSync(config.jobs, 'utf-8'));
}
catch (e) {
console.error('' + e);
return [2 /*return*/];
}
return [4 /*yield*/, LocalApi.run(jobs)];
case 1:
_a.sent();
return [2 /*return*/];
}
});
});
}
run();