molstar
Version:
A comprehensive macromolecular library.
70 lines (69 loc) • 3.33 kB
JavaScript
"use strict";
/**
* Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
Object.defineProperty(exports, "__esModule", { value: true });
exports.SIFTSMapping = void 0;
var tslib_1 = require("tslib");
var int_1 = require("../../../../../mol-data/int");
var sifts_mapping_1 = require("../../../../../mol-model-props/sequence/sifts-mapping");
var sifts_mapping_2 = require("../../../../../mol-model-props/sequence/themes/sifts-mapping");
var structure_1 = require("../../../../../mol-model/structure");
var param_definition_1 = require("../../../../../mol-util/param-definition");
var behavior_1 = require("../../../behavior");
exports.SIFTSMapping = behavior_1.PluginBehavior.create({
name: 'sifts-mapping-prop',
category: 'custom-props',
display: { name: 'SIFTS Mapping' },
ctor: /** @class */ (function (_super) {
tslib_1.__extends(class_1, _super);
function class_1() {
var _this = _super !== null && _super.apply(this, arguments) || this;
_this.provider = sifts_mapping_1.SIFTSMapping.Provider;
_this.labelProvider = {
label: function (loci) {
if (!_this.params.showTooltip)
return;
return bestDatabaseSequenceMappingLabel(loci);
}
};
return _this;
}
class_1.prototype.update = function (p) {
var updated = (this.params.autoAttach !== p.autoAttach ||
this.params.showTooltip !== p.showTooltip);
this.params.autoAttach = p.autoAttach;
this.params.showTooltip = p.showTooltip;
this.ctx.customStructureProperties.setDefaultAutoAttach(this.provider.descriptor.name, this.params.autoAttach);
return updated;
};
class_1.prototype.register = function () {
this.ctx.customModelProperties.register(this.provider, this.params.autoAttach);
this.ctx.representation.structure.themes.colorThemeRegistry.add(sifts_mapping_2.SIFTSMappingColorThemeProvider);
this.ctx.managers.lociLabels.addProvider(this.labelProvider);
};
class_1.prototype.unregister = function () {
this.ctx.customModelProperties.unregister(this.provider.descriptor.name);
this.ctx.representation.structure.themes.colorThemeRegistry.remove(sifts_mapping_2.SIFTSMappingColorThemeProvider);
this.ctx.managers.lociLabels.removeProvider(this.labelProvider);
};
return class_1;
}(behavior_1.PluginBehavior.Handler)),
params: function () { return ({
autoAttach: param_definition_1.ParamDefinition.Boolean(true),
showTooltip: param_definition_1.ParamDefinition.Boolean(true)
}); }
});
//
function bestDatabaseSequenceMappingLabel(loci) {
if (loci.kind === 'element-loci') {
if (loci.elements.length === 0)
return;
var e = loci.elements[0];
var u = e.unit;
var se = structure_1.StructureElement.Location.create(loci.structure, u, u.elements[int_1.OrderedSet.getAt(e.indices, 0)]);
return sifts_mapping_1.SIFTSMapping.getLabel(se);
}
}