molstar
Version:
A comprehensive macromolecular library.
114 lines (103 loc) • 5.34 kB
HTML
<html lang="en">
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
<link rel="icon" href="./favicon.ico" type="image/x-icon">
<title>Mol* Viewer</title>
<style>
* {
margin: 0;
padding: 0;
box-sizing: border-box;
}
html, body {
width: 100%;
height: 100%;
overflow: hidden;
}
hr {
margin: 10px;
}
h1, h2, h3, h4, h5 {
margin-top: 5px;
margin-bottom: 3px;
}
button {
padding: 2px;
}
#app {
position: absolute;
left: 100px;
top: 100px;
width: 800px;
height: 600px;
}
</style>
<link rel="stylesheet" type="text/css" href="molstar.css" />
</head>
<body>
<div id="app"></div>
<script type="text/javascript" src="./molstar.js"></script>
<script type="text/javascript">
function getParam(name, regex) {
var r = new RegExp(name + '=' + '(' + regex + ')[&]?', 'i');
return decodeURIComponent(((window.location.search || '').match(r) || [])[1] || '');
}
var debugMode = getParam('debug-mode', '[^&]+').trim() === '1';
if (debugMode) molstar.setDebugMode(debugMode);
var timingMode = getParam('timing-mode', '[^&]+').trim() === '1';
if (timingMode) molstar.setTimingMode(timingMode);
var hideControls = getParam('hide-controls', '[^&]+').trim() === '1';
var collapseLeftPanel = getParam('collapse-left-panel', '[^&]+').trim() === '1';
var pdbProvider = getParam('pdb-provider', '[^&]+').trim().toLowerCase();
var emdbProvider = getParam('emdb-provider', '[^&]+').trim().toLowerCase();
var mapProvider = getParam('map-provider', '[^&]+').trim().toLowerCase();
var pixelScale = getParam('pixel-scale', '[^&]+').trim();
var pickScale = getParam('pick-scale', '[^&]+').trim();
var pickPadding = getParam('pick-padding', '[^&]+').trim();
var disableWboit = getParam('disable-wboit', '[^&]+').trim() === '1';
var enableDpoit = getParam('enable-dpoit', '[^&]+').trim() === '1';
var preferWebgl1 = getParam('prefer-webgl1', '[^&]+').trim() === '1' || void 0;
var allowMajorPerformanceCaveat = getParam('allow-major-performance-caveat', '[^&]+').trim() === '1';
molstar.Viewer.create('app', {
layoutShowControls: !hideControls,
viewportShowExpand: false,
collapseLeftPanel: collapseLeftPanel,
pdbProvider: pdbProvider || 'pdbe',
emdbProvider: emdbProvider || 'pdbe',
volumeStreamingServer: (mapProvider || 'pdbe') === 'rcsb'
? 'https://maps.rcsb.org'
: 'https://www.ebi.ac.uk/pdbe/densities',
pixelScale: parseFloat(pixelScale) || 1,
pickScale: parseFloat(pickScale) || 0.25,
pickPadding: isNaN(parseFloat(pickPadding)) ? 1 : parseFloat(pickPadding),
enableWboit: (disableWboit || enableDpoit) ? false : void 0, // use default value if disable-wboit is not set
enableDpoit: enableDpoit ? true : void 0,
preferWebgl1: preferWebgl1,
allowMajorPerformanceCaveat: allowMajorPerformanceCaveat,
}).then(viewer => {
var snapshotId = getParam('snapshot-id', '[^&]+').trim();
if (snapshotId) viewer.setRemoteSnapshot(snapshotId);
var snapshotUrl = getParam('snapshot-url', '[^&]+').trim();
var snapshotUrlType = getParam('snapshot-url-type', '[^&]+').toLowerCase().trim() || 'molj';
if (snapshotUrl && snapshotUrlType) viewer.loadSnapshotFromUrl(snapshotUrl, snapshotUrlType);
var structureUrl = getParam('structure-url', '[^&]+').trim();
var structureUrlFormat = getParam('structure-url-format', '[a-z]+').toLowerCase().trim();
var structureUrlIsBinary = getParam('structure-url-is-binary', '[^&]+').trim() === '1';
if (structureUrl) viewer.loadStructureFromUrl(structureUrl, structureUrlFormat, structureUrlIsBinary);
var pdb = getParam('pdb', '[^&]+').trim();
if (pdb) viewer.loadPdb(pdb);
var pdbDev = getParam('pdb-dev', '[^&]+').trim();
if (pdbDev) viewer.loadPdbDev(pdbDev);
var emdb = getParam('emdb', '[^&]+').trim();
if (emdb) viewer.loadEmdb(emdb);
var afdb = getParam('afdb', '[^&]+').trim();
if (afdb) viewer.loadAlphaFoldDb(afdb);
var modelArchive = getParam('model-archive', '[^&]+').trim();
if (modelArchive) viewer.loadModelArchive(modelArchive);
});
</script>
<!-- __MOLSTAR_ANALYTICS__ -->
</body>
</html>