molstar
Version:
A comprehensive macromolecular library.
58 lines • 2.54 kB
JavaScript
/**
* Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author Alexander Rose <alexander.rose@weirdbyte.de>
*/
import { Color, ColorScale } from '../../mol-util/color';
import { StructureElement, Bond } from '../../mol-model/structure';
import { ParamDefinition as PD } from '../../mol-util/param-definition';
import { AtomPartialCharge } from '../../mol-model-formats/structure/property/partial-charge';
var DefaultPartialChargeColor = Color(0xffff99);
var Description = "Assigns a color based on the partial charge of an atom.";
export var PartialChargeColorThemeParams = {
domain: PD.Interval([-1, 1]),
list: PD.ColorList('red-white-blue', { presetKind: 'scale' }),
};
export function getPartialChargeColorThemeParams(ctx) {
return PartialChargeColorThemeParams; // TODO return copy
}
function getPartialCharge(unit, element) {
var _a;
return (_a = AtomPartialCharge.Provider.get(unit.model)) === null || _a === void 0 ? void 0 : _a.data.value(element);
}
export function PartialChargeColorTheme(ctx, props) {
var scale = ColorScale.create({
domain: props.domain,
listOrName: props.list.colors,
});
function color(location) {
if (StructureElement.Location.is(location)) {
var q = getPartialCharge(location.unit, location.element);
return q !== undefined ? scale.color(q) : DefaultPartialChargeColor;
}
else if (Bond.isLocation(location)) {
var q = getPartialCharge(location.aUnit, location.aUnit.elements[location.aIndex]);
return q !== undefined ? scale.color(q) : DefaultPartialChargeColor;
}
return DefaultPartialChargeColor;
}
return {
factory: PartialChargeColorTheme,
granularity: 'group',
preferSmoothing: true,
color: color,
props: props,
description: Description,
legend: scale ? scale.legend : undefined
};
}
export var PartialChargeColorThemeProvider = {
name: 'partial-charge',
label: 'Partial Charge',
category: "Atom Property" /* Atom */,
factory: PartialChargeColorTheme,
getParams: getPartialChargeColorThemeParams,
defaultValues: PD.getDefaultValues(PartialChargeColorThemeParams),
isApplicable: function (ctx) { return !!ctx.structure && ctx.structure.models.some(function (m) { return AtomPartialCharge.Provider.get(m) !== undefined; }); }
};
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