molstar
Version:
A comprehensive macromolecular library.
40 lines • 2.41 kB
JavaScript
/**
* Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author Alexander Rose <alexander.rose@weirdbyte.de>
*/
import { __assign } from "tslib";
import { ParamDefinition as PD } from '../../../mol-util/param-definition';
import { GaussianDensityVolumeParams, GaussianDensityVolumeVisual, UnitsGaussianDensityVolumeVisual } from '../visual/gaussian-density-volume';
import { StructureRepresentationProvider, ComplexRepresentation, StructureRepresentationStateBuilder, UnitsRepresentation } from '../representation';
import { Representation } from '../../../mol-repr/representation';
import { DirectVolume } from '../../../mol-geo/geometry/direct-volume/direct-volume';
var GaussianVolumeVisuals = {
'gaussian-volume': function (ctx, getParams) { return ComplexRepresentation('Gaussian volume', ctx, getParams, GaussianDensityVolumeVisual); },
'units-gaussian-volume': function (ctx, getParams) { return UnitsRepresentation('Units-Gaussian volume', ctx, getParams, UnitsGaussianDensityVolumeVisual); }
};
export var GaussianVolumeParams = __assign(__assign({}, GaussianDensityVolumeParams), { visuals: PD.MultiSelect(['gaussian-volume'], PD.objectToOptions(GaussianVolumeVisuals)) });
export function getGaussianVolumeParams(ctx, structure) {
var p = PD.clone(GaussianVolumeParams);
p.renderMode = DirectVolume.createRenderModeParam({
// TODO find a better way to set
min: 0, max: 1, mean: 0.04, sigma: 0.01
});
p.jumpLength = PD.Numeric(4, { min: 0, max: 20, step: 0.1 });
return p;
}
export function GaussianVolumeRepresentation(ctx, getParams) {
return Representation.createMulti('Gaussian Volume', ctx, getParams, StructureRepresentationStateBuilder, GaussianVolumeVisuals);
}
export var GaussianVolumeRepresentationProvider = StructureRepresentationProvider({
name: 'gaussian-volume',
label: 'Gaussian Volume',
description: 'Displays a gaussian molecular density using direct volume rendering.',
factory: GaussianVolumeRepresentation,
getParams: getGaussianVolumeParams,
defaultValues: PD.getDefaultValues(GaussianVolumeParams),
defaultColorTheme: { name: 'chain-id' },
defaultSizeTheme: { name: 'uniform' },
isApplicable: function (structure) { return structure.elementCount > 0; }
});
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