molstar
Version:
A comprehensive macromolecular library.
43 lines • 1.05 kB
JavaScript
/**
* Copyright (c) 2019 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author Sebastian Bittrich <sebastian.bittrich@rcsb.org>
*/
/** Chothia's amino acid and nucleotide atom vdw radii */
export var VdWLookup = [
-1.0,
1.76,
1.87,
1.65,
1.50,
1.40,
1.85,
1.80,
1.60,
1.40 // 9: P (nucleic)
]; // can still be appended on-the-fly for rare elements like selenium
/** Maximum accessible surface area observed for amino acids. Taken from: http://dx.doi.org/10.1371/journal.pone.0080635 */
export var MaxAsa = {
'ALA': 121.0,
'ARG': 265.0,
'ASN': 187.0,
'ASP': 187.0,
'CYS': 148.0,
'GLU': 214.0,
'GLN': 214.0,
'GLY': 97.0,
'HIS': 216.0,
'ILE': 195.0,
'LEU': 191.0,
'LYS': 230.0,
'MET': 203.0,
'PHE': 228.0,
'PRO': 154.0,
'SER': 143.0,
'THR': 163.0,
'TRP': 264.0,
'TYR': 255.0,
'VAL': 165.0
};
export var DefaultMaxAsa = 121.0;
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