molstar
Version:
A comprehensive macromolecular library.
72 lines • 3.7 kB
JavaScript
/**
* Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
import { __extends } from "tslib";
import { OrderedSet } from '../../../mol-data/int';
import { StructureQualityReport, StructureQualityReportProvider } from './prop';
import { StructureQualityReportColorThemeProvider } from './color';
import { StructureElement } from '../../../mol-model/structure';
import { ParamDefinition as PD } from '../../../mol-util/param-definition';
import { PluginBehavior } from '../../../mol-plugin/behavior/behavior';
export var PDBeStructureQualityReport = PluginBehavior.create({
name: 'pdbe-structure-quality-report-prop',
category: 'custom-props',
display: {
name: 'Structure Quality Report',
description: 'Data from wwPDB Validation Report, obtained via PDBe.'
},
ctor: /** @class */ (function (_super) {
__extends(class_1, _super);
function class_1() {
var _this = _super !== null && _super.apply(this, arguments) || this;
_this.provider = StructureQualityReportProvider;
_this.labelPDBeValidation = {
label: function (loci) {
if (!_this.params.showTooltip)
return void 0;
switch (loci.kind) {
case 'element-loci':
if (loci.elements.length === 0)
return void 0;
var e = loci.elements[0];
var u = e.unit;
if (!u.model.customProperties.hasReference(StructureQualityReportProvider.descriptor))
return void 0;
var se = StructureElement.Location.create(loci.structure, u, u.elements[OrderedSet.getAt(e.indices, 0)]);
var issues = StructureQualityReport.getIssues(se);
if (issues.length === 0)
return 'Validation: No Issues';
return "Validation: " + issues.join(', ');
default: return void 0;
}
}
};
return _this;
}
class_1.prototype.register = function () {
this.ctx.customModelProperties.register(this.provider, this.params.autoAttach);
this.ctx.managers.lociLabels.addProvider(this.labelPDBeValidation);
this.ctx.representation.structure.themes.colorThemeRegistry.add(StructureQualityReportColorThemeProvider);
};
class_1.prototype.update = function (p) {
var updated = this.params.autoAttach !== p.autoAttach;
this.params.autoAttach = p.autoAttach;
this.params.showTooltip = p.showTooltip;
this.ctx.customModelProperties.setDefaultAutoAttach(this.provider.descriptor.name, this.params.autoAttach);
return updated;
};
class_1.prototype.unregister = function () {
this.ctx.customModelProperties.unregister(StructureQualityReportProvider.descriptor.name);
this.ctx.managers.lociLabels.removeProvider(this.labelPDBeValidation);
this.ctx.representation.structure.themes.colorThemeRegistry.remove(StructureQualityReportColorThemeProvider);
};
return class_1;
}(PluginBehavior.Handler)),
params: function () { return ({
autoAttach: PD.Boolean(false),
showTooltip: PD.Boolean(true)
}); }
});
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