molstar/lib/commonjs/servers/model/query.js

A comprehensive macromolecular library.

#!/usr/bin/env node

"use strict";
/**
 * Copyright (c) 2018 mol* contributors, licensed under MIT, See LICENSE file for more info.
 *
 * @author David Sehnal <david.sehnal@gmail.com>
 */
Object.defineProperty(exports, "__esModule", { value: true });
var tslib_1 = require("tslib");
var fs = (0, tslib_1.__importStar)(require("fs"));
var version_1 = require("./version");
var api_local_1 = require("./server/api-local");
console.log("Mol* ModelServer (" + version_1.VERSION + "), (c) 2018-2020 Mol* authors");
console.log("");
var exampleWorkload = [{
        output: 'c:/test/quick/localapi/1tqn_full.cif',
        queries: [{
                input: 'c:/test/quick/1tqn.cif',
                query: 'full', // same as defined in Api/Queries
            }]
    }, {
        output: 'c:/test/quick/localapi/1tqn_full.bcif',
        queries: [{
                input: 'c:/test/quick/1tqn.cif',
                query: 'full'
            }]
    }, {
        output: 'c:/test/quick/localapi/1cbs_ligint.cif',
        queries: [{
                input: 'c:/test/quick/1cbs_updated.cif',
                query: 'residueInteraction',
                params: { atom_site: { label_comp_id: 'REA' }, radius: 5 }
            }]
    }, {
        output: 'c:/test/quick/localapi/1cbs_ligint.bcif',
        queries: [{
                input: 'c:/test/quick/1cbs_updated.cif',
                query: 'residueInteraction',
                params: { atom_site: [{ label_comp_id: 'REA' }], radius: 5 } // parameters are just a JSON version of the query string
            }]
    }, {
        output: 'c:/test/quick/localapi/multiple.tar.gz',
        queries: [{
                input: 'c:/test/quick/1cbs_updated.cif',
                query: 'residueInteraction',
                params: { atom_site: { label_comp_id: 'REA' }, radius: 5 }
            }, {
                input: 'c:/test/quick/1tqn.cif',
                query: 'full', // same as defined in Api/Queries
            }],
        asTarGz: true,
        gzipLevel: 6
    }];
if (process.argv.length !== 3) {
    var help = [
        "Usage: ",
        "",
        "   node local jobs.json",
        "",
        "jobs.json is a JSON version of the WebAPI. Query names are case sensitive.",
        "The jobs are automatically sorted by inputFilenama and the given file is only loaded once.",
        "All processing errors are sent to stderr.",
        "",
        "Jobs example:",
        "",
        JSON.stringify(exampleWorkload, null, 2)
    ];
    console.log(help.join('\n'));
}
else {
    try {
        var input = JSON.parse(fs.readFileSync(process.argv[2], 'utf8'));
        (0, api_local_1.runLocal)(input);
    }
    catch (e) {
        console.error(e);
    }
}
// TODO: write utility that splits jobs into multiple chunks?
//# sourceMappingURL=query.js.map