molstar
Version:
A comprehensive macromolecular library.
45 lines • 2.99 kB
JavaScript
;
/**
* Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author Alexander Rose <alexander.rose@weirdbyte.de>
*/
Object.defineProperty(exports, "__esModule", { value: true });
exports.GaussianVolumeRepresentationProvider = exports.GaussianVolumeRepresentation = exports.getGaussianVolumeParams = exports.GaussianVolumeParams = void 0;
var tslib_1 = require("tslib");
var param_definition_1 = require("../../../mol-util/param-definition");
var gaussian_density_volume_1 = require("../visual/gaussian-density-volume");
var representation_1 = require("../representation");
var representation_2 = require("../../../mol-repr/representation");
var direct_volume_1 = require("../../../mol-geo/geometry/direct-volume/direct-volume");
var GaussianVolumeVisuals = {
'gaussian-volume': function (ctx, getParams) { return (0, representation_1.ComplexRepresentation)('Gaussian volume', ctx, getParams, gaussian_density_volume_1.GaussianDensityVolumeVisual); },
'units-gaussian-volume': function (ctx, getParams) { return (0, representation_1.UnitsRepresentation)('Units-Gaussian volume', ctx, getParams, gaussian_density_volume_1.UnitsGaussianDensityVolumeVisual); }
};
exports.GaussianVolumeParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, gaussian_density_volume_1.GaussianDensityVolumeParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['gaussian-volume'], param_definition_1.ParamDefinition.objectToOptions(GaussianVolumeVisuals)) });
function getGaussianVolumeParams(ctx, structure) {
var p = param_definition_1.ParamDefinition.clone(exports.GaussianVolumeParams);
p.renderMode = direct_volume_1.DirectVolume.createRenderModeParam({
// TODO find a better way to set
min: 0, max: 1, mean: 0.04, sigma: 0.01
});
p.jumpLength = param_definition_1.ParamDefinition.Numeric(4, { min: 0, max: 20, step: 0.1 });
return p;
}
exports.getGaussianVolumeParams = getGaussianVolumeParams;
function GaussianVolumeRepresentation(ctx, getParams) {
return representation_2.Representation.createMulti('Gaussian Volume', ctx, getParams, representation_1.StructureRepresentationStateBuilder, GaussianVolumeVisuals);
}
exports.GaussianVolumeRepresentation = GaussianVolumeRepresentation;
exports.GaussianVolumeRepresentationProvider = (0, representation_1.StructureRepresentationProvider)({
name: 'gaussian-volume',
label: 'Gaussian Volume',
description: 'Displays a gaussian molecular density using direct volume rendering.',
factory: GaussianVolumeRepresentation,
getParams: getGaussianVolumeParams,
defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.GaussianVolumeParams),
defaultColorTheme: { name: 'chain-id' },
defaultSizeTheme: { name: 'uniform' },
isApplicable: function (structure) { return structure.elementCount > 0; }
});
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