molstar
Version:
A comprehensive macromolecular library.
340 lines • 20.2 kB
JavaScript
"use strict";
Object.defineProperty(exports, "__esModule", { value: true });
exports.StructureSourceControls = void 0;
var tslib_1 = require("tslib");
var jsx_runtime_1 = require("react/jsx-runtime");
/**
* Copyright (c) 2020-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
* @author Alexander Rose <alexander.rose@weirdbyte.de>
*/
var structure_1 = require("../../mol-model/structure");
var transforms_1 = require("../../mol-plugin-state/transforms");
var mol_state_1 = require("../../mol-state");
var base_1 = require("../base");
var action_menu_1 = require("../controls/action-menu");
var common_1 = require("../controls/common");
var icons_1 = require("../controls/icons");
var parameters_1 = require("../controls/parameters");
var update_transform_1 = require("../state/update-transform");
var focus_1 = require("./focus");
var selection_1 = require("./selection");
var StructureSourceControls = /** @class */ (function (_super) {
(0, tslib_1.__extends)(StructureSourceControls, _super);
function StructureSourceControls() {
var _this = _super !== null && _super.apply(this, arguments) || this;
_this.item = function (ref) {
var _a, _b, _c, _d, _e, _f, _g, _h, _j;
var selected = _this.plugin.managers.structure.hierarchy.seletionSet;
var label;
switch (ref.kind) {
case 'model': {
var model = (_a = ref.cell.obj) === null || _a === void 0 ? void 0 : _a.data;
if (model && structure_1.Model.TrajectoryInfo.get(model).size > 1) {
label = ((_b = ref.cell.obj) === null || _b === void 0 ? void 0 : _b.data.entryId) + " | Model " + (structure_1.Model.TrajectoryInfo.get(model).index + 1) + " of " + structure_1.Model.TrajectoryInfo.get(model).size;
}
label = ((_c = ref.cell.obj) === null || _c === void 0 ? void 0 : _c.data.entryId) + " | " + ((_d = ref.cell.obj) === null || _d === void 0 ? void 0 : _d.label);
break;
}
case 'structure': {
var model = (_e = ref.cell.obj) === null || _e === void 0 ? void 0 : _e.data.models[0];
if (model && structure_1.Model.TrajectoryInfo.get(model).size > 1) {
label = model.entryId + " | " + ((_f = ref.cell.obj) === null || _f === void 0 ? void 0 : _f.label) + " (Model " + (structure_1.Model.TrajectoryInfo.get(model).index + 1) + " of " + structure_1.Model.TrajectoryInfo.get(model).size + ")";
break;
}
else if (model) {
label = model.entryId + " | " + ((_g = ref.cell.obj) === null || _g === void 0 ? void 0 : _g.label);
break;
}
else {
label = "" + ((_h = ref.cell.obj) === null || _h === void 0 ? void 0 : _h.label);
break;
}
}
default:
label = (_j = ref.cell.obj) === null || _j === void 0 ? void 0 : _j.label;
break;
}
var item = { kind: 'item', label: label || ref.kind, selected: selected.has(ref.cell.transform.ref), value: [ref] };
return item;
};
_this.getTrajectoryItems = function (t) {
var _a;
if (t.models.length === 0)
return _this.item(t);
return (0, tslib_1.__spreadArray)([action_menu_1.ActionMenu.Header((_a = t.cell.obj) === null || _a === void 0 ? void 0 : _a.label)], t.models.map(_this.getModelItems), true);
};
_this.getModelItems = function (m) {
var _a, _b, _c;
if (m.structures.length === 0)
return _this.item(m);
if (m.structures.length === 1) {
var selected = _this.plugin.managers.structure.hierarchy.seletionSet;
var ref = m.structures[0];
return { label: ((_a = m.cell.obj) === null || _a === void 0 ? void 0 : _a.label) + " | " + ((_b = ref.cell.obj) === null || _b === void 0 ? void 0 : _b.label), selected: selected.has(ref.cell.transform.ref), value: [m, ref] };
}
return (0, tslib_1.__spreadArray)([action_menu_1.ActionMenu.Header((_c = m.cell.obj) === null || _c === void 0 ? void 0 : _c.label)], m.structures.map(_this.item), true);
};
_this.selectHierarchy = function (items) {
if (!items || items.length === 0)
return;
var refs = [];
for (var _i = 0, items_1 = items; _i < items_1.length; _i++) {
var i = items_1[_i];
for (var _a = 0, _b = i.value; _a < _b.length; _a++) {
var r = _b[_a];
refs.push(r);
}
}
_this.plugin.managers.structure.hierarchy.updateCurrent(refs, items[0].selected ? 'remove' : 'add');
};
_this.toggleHierarchy = function () { return _this.setState({ show: _this.state.show !== 'hierarchy' ? 'hierarchy' : void 0 }); };
_this.togglePreset = function () { return _this.setState({ show: _this.state.show !== 'presets' ? 'presets' : void 0 }); };
_this.applyPreset = function (item) {
_this.setState({ show: void 0 });
if (!item)
return;
var mng = _this.plugin.managers.structure;
var trajectories = mng.hierarchy.selection.trajectories;
mng.hierarchy.applyPreset(trajectories, item.value);
};
_this.updateModelQueueParams = void 0;
_this.isUpdatingModel = false;
_this.updateStructureModel = function (params) {
_this.updateModelQueueParams = params;
_this._updateStructureModel();
};
_this.updateStructure = function (params) {
var selection = _this.plugin.managers.structure.hierarchy.selection;
var s = selection.structures[0];
return _this.plugin.managers.structure.hierarchy.updateStructure(s, params);
};
return _this;
}
StructureSourceControls.prototype.defaultState = function () {
return {
header: 'Structure',
isCollapsed: false,
isBusy: false,
brand: { accent: 'purple', svg: icons_1.MoleculeSvg }
};
};
StructureSourceControls.prototype.componentDidMount = function () {
var _this = this;
this.subscribe(this.plugin.managers.structure.hierarchy.behaviors.selection, function () { return _this.forceUpdate(); });
this.subscribe(this.plugin.behaviors.state.isBusy, function (v) {
_this.setState({ isBusy: v });
});
};
Object.defineProperty(StructureSourceControls.prototype, "hierarchyItems", {
get: function () {
var mng = this.plugin.managers.structure.hierarchy;
var current = mng.current;
var ret = [];
if (current.trajectories.length > 1) {
ret.push((0, tslib_1.__spreadArray)([
action_menu_1.ActionMenu.Header('Trajectories')
], current.trajectories.map(this.item), true));
}
if (current.models.length > 1 || current.trajectories.length > 1) {
ret.push((0, tslib_1.__spreadArray)([
action_menu_1.ActionMenu.Header('Models')
], current.models.map(this.item), true));
}
if (current.trajectories.length === 1 && current.models.length === 1) {
ret.push.apply(ret, current.structures.map(this.item));
}
else if (current.structures.length > 0) {
ret.push((0, tslib_1.__spreadArray)([
action_menu_1.ActionMenu.Header('Structures')
], current.structures.map(this.item), true));
}
return ret;
},
enumerable: false,
configurable: true
});
Object.defineProperty(StructureSourceControls.prototype, "isEmpty", {
get: function () {
var _a = this.plugin.managers.structure.hierarchy.current, structures = _a.structures, models = _a.models, trajectories = _a.trajectories;
return trajectories.length === 0 && models.length === 0 && structures.length === 0;
},
enumerable: false,
configurable: true
});
Object.defineProperty(StructureSourceControls.prototype, "label", {
get: function () {
var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k, _l, _m, _o, _p;
var _q = this.plugin.managers.structure.hierarchy.selection, structures = _q.structures, models = _q.models, trajectories = _q.trajectories;
if (structures.length === 1) {
var s = structures[0];
if (((_b = (_a = s.model) === null || _a === void 0 ? void 0 : _a.trajectory) === null || _b === void 0 ? void 0 : _b.models) && s.model.trajectory.models.length === 1)
return (_c = s.cell.obj) === null || _c === void 0 ? void 0 : _c.data.label;
if (s.model)
return ((_d = s.model.cell.obj) === null || _d === void 0 ? void 0 : _d.label) + " | " + ((_e = s.cell.obj) === null || _e === void 0 ? void 0 : _e.data.label);
return (_f = s.cell.obj) === null || _f === void 0 ? void 0 : _f.data.label;
}
if (structures.length > 1) {
var p = structures[0];
var t = (_g = p === null || p === void 0 ? void 0 : p.model) === null || _g === void 0 ? void 0 : _g.trajectory;
var sameTraj = true;
for (var _i = 0, structures_1 = structures; _i < structures_1.length; _i++) {
var s = structures_1[_i];
if (((_h = s === null || s === void 0 ? void 0 : s.model) === null || _h === void 0 ? void 0 : _h.trajectory) !== t) {
sameTraj = false;
break;
}
}
return sameTraj && t ? ((_j = t.cell.obj) === null || _j === void 0 ? void 0 : _j.label) + " | " + structures.length + " structures" : structures.length + " structures";
}
if (models.length > 0) {
var t = models[0].trajectory;
if (models.length === 1) {
var model = (_k = models[0].cell.obj) === null || _k === void 0 ? void 0 : _k.data;
if (model && structure_1.Model.TrajectoryInfo.get(model).size > 1) {
return ((_l = t === null || t === void 0 ? void 0 : t.cell.obj) === null || _l === void 0 ? void 0 : _l.label) + " | Model " + (structure_1.Model.TrajectoryInfo.get(model).index + 1) + " of " + structure_1.Model.TrajectoryInfo.get(model).size;
}
else {
return ((_m = t === null || t === void 0 ? void 0 : t.cell.obj) === null || _m === void 0 ? void 0 : _m.label) + " | Model";
}
}
var sameTraj = true;
for (var _r = 0, models_1 = models; _r < models_1.length; _r++) {
var m = models_1[_r];
if (m.trajectory !== t) {
sameTraj = false;
break;
}
}
return sameTraj ? ((_o = t === null || t === void 0 ? void 0 : t.cell.obj) === null || _o === void 0 ? void 0 : _o.label) + " | " + models.length + " models" : models.length + " models";
}
if (trajectories.length > 0) {
return trajectories.length === 1 ? ((_p = trajectories[0].cell.obj) === null || _p === void 0 ? void 0 : _p.label) + " trajectory" : trajectories.length + " trajectories";
}
if (trajectories.length === 0 && models.length === 0 && structures.length === 0) {
return 'Nothing Loaded';
}
return 'Nothing Selected';
},
enumerable: false,
configurable: true
});
Object.defineProperty(StructureSourceControls.prototype, "presetActions", {
get: function () {
var actions = [];
var trajectories = this.plugin.managers.structure.hierarchy.selection.trajectories;
if (trajectories.length === 0)
return actions;
var providers = this.plugin.builders.structure.hierarchy.getPresets(trajectories[0].cell.obj);
if (trajectories.length > 1) {
var providerSet_1 = new Set(providers);
for (var i = 1; i < trajectories.length; i++) {
var providers_3 = this.plugin.builders.structure.hierarchy.getPresets(trajectories[i].cell.obj);
var current = new Set(providers_3);
for (var _i = 0, providers_1 = providers_3; _i < providers_1.length; _i++) {
var p = providers_1[_i];
if (!current.has(p))
providerSet_1.delete(p);
}
}
providers = providers.filter(function (p) { return providerSet_1.has(p); });
}
for (var _a = 0, providers_2 = providers; _a < providers_2.length; _a++) {
var p = providers_2[_a];
actions.push(action_menu_1.ActionMenu.Item(p.display.name, p, { description: p.display.description }));
}
return actions;
},
enumerable: false,
configurable: true
});
StructureSourceControls.prototype._updateStructureModel = function () {
return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
var params, selection, m;
return (0, tslib_1.__generator)(this, function (_a) {
switch (_a.label) {
case 0:
if (!this.updateModelQueueParams || this.isUpdatingModel)
return [2 /*return*/];
params = this.updateModelQueueParams;
this.updateModelQueueParams = void 0;
_a.label = 1;
case 1:
_a.trys.push([1, , 3, 4]);
this.isUpdatingModel = true;
selection = this.plugin.managers.structure.hierarchy.selection;
m = selection.structures[0].model;
return [4 /*yield*/, this.plugin.state.updateTransform(this.plugin.state.data, m.cell.transform.ref, params, 'Model Index')];
case 2:
_a.sent();
return [3 /*break*/, 4];
case 3:
this.isUpdatingModel = false;
this._updateStructureModel();
return [7 /*endfinally*/];
case 4: return [2 /*return*/];
}
});
});
};
Object.defineProperty(StructureSourceControls.prototype, "modelIndex", {
get: function () {
var _a, _b;
var selection = this.plugin.managers.structure.hierarchy.selection;
if (selection.structures.length !== 1)
return null;
var m = selection.structures[0].model;
if (!m || m.cell.transform.transformer !== transforms_1.StateTransforms.Model.ModelFromTrajectory)
return null;
if (!m.cell.obj || structure_1.Model.TrajectoryInfo.get(m.cell.obj.data).size <= 1)
return null;
var params = (_a = m.cell.params) === null || _a === void 0 ? void 0 : _a.definition;
if (!params)
return null;
return (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: params, values: (_b = m.cell.params) === null || _b === void 0 ? void 0 : _b.values, onChangeValues: this.updateStructureModel, isDisabled: this.state.isBusy }, void 0);
},
enumerable: false,
configurable: true
});
Object.defineProperty(StructureSourceControls.prototype, "structureType", {
get: function () {
var _a;
var selection = this.plugin.managers.structure.hierarchy.selection;
if (selection.structures.length !== 1)
return null;
var s = selection.structures[0];
var params = (_a = s.cell.params) === null || _a === void 0 ? void 0 : _a.definition;
if (!params || !s.cell.parent)
return null;
return (0, jsx_runtime_1.jsx)(update_transform_1.UpdateTransformControl, { state: s.cell.parent, transform: s.cell.transform, customHeader: 'none', customUpdate: this.updateStructure, noMargin: true, autoHideApply: true }, void 0);
},
enumerable: false,
configurable: true
});
Object.defineProperty(StructureSourceControls.prototype, "transform", {
get: function () {
var selection = this.plugin.managers.structure.hierarchy.selection;
if (selection.structures.length !== 1)
return null;
var pivot = selection.structures[0];
if (!pivot.cell.parent)
return null;
var t = mol_state_1.StateSelection.tryFindDecorator(this.plugin.state.data, pivot.cell.transform.ref, transforms_1.StateTransforms.Model.TransformStructureConformation);
if (!t)
return;
return (0, jsx_runtime_1.jsx)(common_1.ExpandGroup, (0, tslib_1.__assign)({ header: "Conformation Transform" }, { children: (0, jsx_runtime_1.jsx)(update_transform_1.UpdateTransformControl, { state: t.parent, transform: t.transform, customHeader: 'none', noMargin: true, autoHideApply: true }, void 0) }), void 0);
},
enumerable: false,
configurable: true
});
StructureSourceControls.prototype.renderControls = function () {
var disabled = this.state.isBusy || this.isEmpty;
var presets = this.presetActions;
var label = this.label;
return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-flex-row', style: { marginTop: '1px' } }, { children: [(0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ noOverflow: true, flex: true, onClick: this.toggleHierarchy, disabled: disabled, title: label }, { children: label }), void 0), presets.length > 0 && (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.BookmarksOutlinedSvg, className: 'msp-form-control', flex: '40px', onClick: this.togglePreset, title: 'Apply a structure presets to the current hierarchy.', toggleState: this.state.show === 'presets', disabled: disabled }, void 0)] }), void 0), this.state.show === 'hierarchy' && (0, jsx_runtime_1.jsx)(action_menu_1.ActionMenu, { items: this.hierarchyItems, onSelect: this.selectHierarchy, multiselect: true }, void 0), this.state.show === 'presets' && (0, jsx_runtime_1.jsx)(action_menu_1.ActionMenu, { items: presets, onSelect: this.applyPreset }, void 0), this.modelIndex, this.structureType, this.transform, (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ style: { marginTop: '6px' } }, { children: [(0, jsx_runtime_1.jsx)(focus_1.StructureFocusControls, {}, void 0), (0, jsx_runtime_1.jsx)(selection_1.StructureSelectionStatsControls, { hideOnEmpty: true }, void 0)] }), void 0)] }, void 0);
};
return StructureSourceControls;
}(base_1.CollapsableControls));
exports.StructureSourceControls = StructureSourceControls;
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