molstar
Version:
A comprehensive macromolecular library.
178 lines • 6.52 kB
JavaScript
;
/**
* Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author Michal Malý <michal.maly@ibt.cas.cz>
* @author Jiří Černý <jiri.cerny@ibt.cas.cz>
*/
Object.defineProperty(exports, "__esModule", { value: true });
exports.ConfalPyramidsColorThemeProvider = exports.ConfalPyramidsColorTheme = exports.getConfalPyramidsColorThemeParams = exports.ConfalPyramidsColorThemeParams = void 0;
var property_1 = require("./property");
var types_1 = require("./types");
var color_1 = require("../../../mol-util/color");
var param_definition_1 = require("../../../mol-util/param-definition");
var legend_1 = require("../../../mol-util/legend");
var util_1 = require("../../../mol-data/util");
var DefaultColor = (0, color_1.Color)(0xCCCCCC);
var Description = 'Assigns colors to confal pyramids';
var ErrorColor = (0, color_1.Color)(0xFFA10A);
var ColorMapping = new Map([
['A', (0, color_1.Color)(0xFFC1C1)],
['B', (0, color_1.Color)(0xC8CFFF)],
['BII', (0, color_1.Color)(0x0059DA)],
['miB', (0, color_1.Color)(0x3BE8FB)],
['Z', (0, color_1.Color)(0x01F60E)],
['IC', (0, color_1.Color)(0xFA5CFB)],
['OPN', (0, color_1.Color)(0xE90000)],
['SYN', (0, color_1.Color)(0xFFFF01)],
['N', (0, color_1.Color)(0xF2F2F2)],
]);
var NtCToClasses = new Map([
['NANT', ['N', 'N']],
['AA00', ['A', 'A']],
['AA02', ['A', 'A']],
['AA03', ['A', 'A']],
['AA04', ['A', 'A']],
['AA08', ['A', 'A']],
['AA09', ['A', 'A']],
['AA01', ['A', 'A']],
['AA05', ['A', 'A']],
['AA06', ['A', 'A']],
['AA10', ['A', 'A']],
['AA11', ['A', 'A']],
['AA07', ['A', 'A']],
['AA12', ['A', 'A']],
['AA13', ['A', 'A']],
['AB01', ['A', 'B']],
['AB02', ['A', 'B']],
['AB03', ['A', 'B']],
['AB04', ['A', 'B']],
['AB05', ['A', 'B']],
['BA01', ['B', 'A']],
['BA05', ['B', 'A']],
['BA09', ['B', 'A']],
['BA08', ['BII', 'A']],
['BA10', ['B', 'A']],
['BA13', ['BII', 'A']],
['BA16', ['BII', 'A']],
['BA17', ['BII', 'A']],
['BB00', ['B', 'B']],
['BB01', ['B', 'B']],
['BB17', ['B', 'B']],
['BB02', ['B', 'B']],
['BB03', ['B', 'B']],
['BB11', ['B', 'B']],
['BB16', ['B', 'B']],
['BB04', ['B', 'BII']],
['BB05', ['B', 'BII']],
['BB07', ['BII', 'BII']],
['BB08', ['BII', 'BII']],
['BB10', ['miB', 'miB']],
['BB12', ['miB', 'miB']],
['BB13', ['miB', 'miB']],
['BB14', ['miB', 'miB']],
['BB15', ['miB', 'miB']],
['BB20', ['miB', 'miB']],
['IC01', ['IC', 'IC']],
['IC02', ['IC', 'IC']],
['IC03', ['IC', 'IC']],
['IC04', ['IC', 'IC']],
['IC05', ['IC', 'IC']],
['IC06', ['IC', 'IC']],
['IC07', ['IC', 'IC']],
['OP01', ['OPN', 'OPN']],
['OP02', ['OPN', 'OPN']],
['OP03', ['OPN', 'OPN']],
['OP04', ['OPN', 'OPN']],
['OP05', ['OPN', 'OPN']],
['OP06', ['OPN', 'OPN']],
['OP07', ['OPN', 'OPN']],
['OP08', ['OPN', 'OPN']],
['OP09', ['OPN', 'OPN']],
['OP10', ['OPN', 'OPN']],
['OP11', ['OPN', 'OPN']],
['OP12', ['OPN', 'OPN']],
['OP13', ['OPN', 'OPN']],
['OP14', ['OPN', 'OPN']],
['OP15', ['OPN', 'OPN']],
['OP16', ['OPN', 'OPN']],
['OP17', ['OPN', 'OPN']],
['OP18', ['OPN', 'OPN']],
['OP19', ['OPN', 'OPN']],
['OP20', ['OPN', 'OPN']],
['OP21', ['OPN', 'OPN']],
['OP22', ['OPN', 'OPN']],
['OP23', ['OPN', 'OPN']],
['OP24', ['OPN', 'OPN']],
['OP25', ['OPN', 'OPN']],
['OP26', ['OPN', 'OPN']],
['OP27', ['OPN', 'OPN']],
['OP28', ['OPN', 'OPN']],
['OP29', ['OPN', 'OPN']],
['OP30', ['OPN', 'OPN']],
['OP31', ['OPN', 'OPN']],
['OPS1', ['OPN', 'OPN']],
['OP1S', ['OPN', 'SYN']],
['AAS1', ['SYN', 'A']],
['AB1S', ['A', 'SYN']],
['AB2S', ['A', 'SYN']],
['BB1S', ['B', 'SYN']],
['BB2S', ['B', 'SYN']],
['BBS1', ['SYN', 'B']],
['ZZ01', ['Z', 'Z']],
['ZZ02', ['Z', 'Z']],
['ZZ1S', ['Z', 'SYN']],
['ZZ2S', ['Z', 'SYN']],
['ZZS1', ['SYN', 'Z']],
['ZZS2', ['SYN', 'Z']],
]);
function getConformerColor(ntc, useLower) {
var _a;
var item = NtCToClasses.get(ntc);
if (!item)
return ErrorColor;
return (_a = ColorMapping.get(useLower ? item[1] : item[0])) !== null && _a !== void 0 ? _a : ErrorColor;
}
exports.ConfalPyramidsColorThemeParams = {};
function getConfalPyramidsColorThemeParams(ctx) {
return exports.ConfalPyramidsColorThemeParams; // TODO return copy
}
exports.getConfalPyramidsColorThemeParams = getConfalPyramidsColorThemeParams;
function ConfalPyramidsColorTheme(ctx, props) {
function color(location, isSecondary) {
if (types_1.ConfalPyramidsTypes.isLocation(location)) {
var _a = location.data, pyramid = _a.pyramid, isLower = _a.isLower;
return getConformerColor(pyramid.NtC, isLower);
}
return DefaultColor;
}
return {
factory: ConfalPyramidsColorTheme,
granularity: 'group',
color: color,
props: props,
description: Description,
legend: (0, legend_1.TableLegend)((0, util_1.iterableToArray)(ColorMapping.entries()).map(function (_a) {
var conformer = _a[0], color = _a[1];
return [conformer, color];
}).concat([
['Error', ErrorColor],
['Unknown', DefaultColor]
]))
};
}
exports.ConfalPyramidsColorTheme = ConfalPyramidsColorTheme;
exports.ConfalPyramidsColorThemeProvider = {
name: 'confal-pyramids',
label: 'Confal Pyramids',
category: "Residue Property" /* Residue */,
factory: ConfalPyramidsColorTheme,
getParams: getConfalPyramidsColorThemeParams,
defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.ConfalPyramidsColorThemeParams),
isApplicable: function (ctx) { return !!ctx.structure && ctx.structure.models.some(function (m) { return property_1.ConfalPyramids.isApplicable(m); }); },
ensureCustomProperties: {
attach: function (ctx, data) { return data.structure ? property_1.ConfalPyramidsProvider.attach(ctx, data.structure.models[0], void 0, true) : Promise.resolve(); },
detach: function (data) { return data.structure && property_1.ConfalPyramidsProvider.ref(data.structure.models[0], false); }
}
};
//# sourceMappingURL=color.js.map