molstar
Version:
A comprehensive macromolecular library.
112 lines • 7.02 kB
JavaScript
;
/**
* Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author Alexander Rose <alexander.rose@weirdbyte.de>
*/
Object.defineProperty(exports, "__esModule", { value: true });
exports.CellpackMembranePreset = exports.CellpackMembranePresetParams = exports.CellpackPackingPreset = exports.CellpackPackingPresetParams = void 0;
var tslib_1 = require("tslib");
var mol_state_1 = require("../../mol-state");
var representation_preset_1 = require("../../mol-plugin-state/builder/structure/representation-preset");
var param_definition_1 = require("../../mol-util/param-definition");
var names_1 = require("../../mol-util/color/names");
var generate_1 = require("./color/generate");
var property_1 = require("./property");
var provided_1 = require("./color/provided");
exports.CellpackPackingPresetParams = {
traceOnly: param_definition_1.ParamDefinition.Boolean(true),
representation: param_definition_1.ParamDefinition.Select('gaussian-surface', param_definition_1.ParamDefinition.arrayToOptions(['gaussian-surface', 'spacefill', 'point', 'orientation'])),
};
exports.CellpackPackingPreset = (0, representation_preset_1.StructureRepresentationPresetProvider)({
id: 'preset-structure-representation-cellpack-packing',
display: { name: 'CellPack Packing' },
params: function () { return exports.CellpackPackingPresetParams; },
apply: function (ref, params, plugin) {
var _a, _b;
return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
var structureCell, reprProps, components, info, color, _c, update, builder, typeParams, representations;
var _d;
return (0, tslib_1.__generator)(this, function (_e) {
switch (_e.label) {
case 0:
structureCell = mol_state_1.StateObjectRef.resolveAndCheck(plugin.state.data, ref);
if (!structureCell)
return [2 /*return*/, {}];
reprProps = {
ignoreHydrogens: true,
traceOnly: params.traceOnly
};
_d = {};
return [4 /*yield*/, (0, representation_preset_1.presetStaticComponent)(plugin, structureCell, 'polymer')];
case 1:
components = (_d.polymer = _e.sent(),
_d);
if (params.representation === 'gaussian-surface') {
Object.assign(reprProps, {
quality: 'custom', resolution: 10, radiusOffset: 2, doubleSided: false
});
}
else if (params.representation === 'spacefill' && params.traceOnly) {
Object.assign(reprProps, { sizeFactor: 2 });
}
info = ((_a = structureCell.obj) === null || _a === void 0 ? void 0 : _a.data) && property_1.CellPackInfoProvider.get((_b = structureCell.obj) === null || _b === void 0 ? void 0 : _b.data).value;
color = (info === null || info === void 0 ? void 0 : info.colors) ? provided_1.CellPackProvidedColorThemeProvider.name : generate_1.CellPackGenerateColorThemeProvider.name;
_c = representation_preset_1.StructureRepresentationPresetProvider.reprBuilder(plugin, {}), update = _c.update, builder = _c.builder, typeParams = _c.typeParams;
representations = {
polymer: builder.buildRepresentation(update, components.polymer, { type: params.representation, typeParams: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, typeParams), reprProps), color: color }, { tag: 'polymer' })
};
return [4 /*yield*/, update.commit({ revertOnError: true })];
case 2:
_e.sent();
return [2 /*return*/, { components: components, representations: representations }];
}
});
});
}
});
//
exports.CellpackMembranePresetParams = {
representation: param_definition_1.ParamDefinition.Select('gaussian-surface', param_definition_1.ParamDefinition.arrayToOptions(['gaussian-surface', 'spacefill', 'point', 'orientation'])),
};
exports.CellpackMembranePreset = (0, representation_preset_1.StructureRepresentationPresetProvider)({
id: 'preset-structure-representation-cellpack-membrane',
display: { name: 'CellPack Membrane' },
params: function () { return exports.CellpackMembranePresetParams; },
apply: function (ref, params, plugin) {
return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
var structureCell, reprProps, components, _a, update, builder, typeParams, representations;
var _b;
return (0, tslib_1.__generator)(this, function (_c) {
switch (_c.label) {
case 0:
structureCell = mol_state_1.StateObjectRef.resolveAndCheck(plugin.state.data, ref);
if (!structureCell)
return [2 /*return*/, {}];
reprProps = {
ignoreHydrogens: true,
};
_b = {};
return [4 /*yield*/, (0, representation_preset_1.presetStaticComponent)(plugin, structureCell, 'all', { label: 'Membrane' })];
case 1:
components = (_b.membrane = _c.sent(),
_b);
if (params.representation === 'gaussian-surface') {
Object.assign(reprProps, {
quality: 'custom', resolution: 10, radiusOffset: 2, doubleSided: false
});
}
_a = representation_preset_1.StructureRepresentationPresetProvider.reprBuilder(plugin, {}), update = _a.update, builder = _a.builder, typeParams = _a.typeParams;
representations = {
membrane: builder.buildRepresentation(update, components.membrane, { type: 'gaussian-surface', typeParams: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, typeParams), reprProps), color: 'uniform', colorParams: { value: names_1.ColorNames.lightgrey } }, { tag: 'all' })
};
return [4 /*yield*/, update.commit({ revertOnError: true })];
case 2:
_c.sent();
return [2 /*return*/, { components: components, representations: representations }];
}
});
});
}
});
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