modified-dicom-pacs/public/7.bundle.5acc01c3f29cfa42e6b5.js

A modified version of DICOM PACS implementation

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e of s){const t=!0;await c.addSegmentationRepresentationToToolGroup(e,i,t,l),c.setActiveSegmentationForToolGroup(i,e)}return c.addSegment(i,{segmentIndex:1,properties:{label:"Segment 1"}}),i},setSegmentationActiveForToolGroups:({segmentationId:e})=>{d().forEach((t=>{c.setActiveSegmentationForToolGroup(e,t)}))},thresholdSegmentationByRectangleROITool:({segmentationId:e,config:t,segmentIndex:a})=>{const i=E.segmentation.state.getSegmentation(e),{representationData:s}=i,{displaySetMatchDetails:l}=r.getMatchDetails(),c=`cornerstoneStreamingImageVolume:${l.get("ctDisplaySet").displaySetInstanceUID}`,{volumeId:m}=s[B],{referencedVolumeId:p}=w.cache.getVolume(m),u=g(_);if(0===u.length)return void o.show({title:"Commands Module",message:"No ROIThreshold Tool is Selected",type:"error"});const d=w.cache.getVolume(e);let y=w.cache.getVolume(p);const h=w.cache.getVolume(c);if(!y)throw new Error("No Reference volume found");if(!d)throw new Error("No Reference labelmap found");const S=E.annotation.state.getAnnotation(u[0]),{metadata:{enabledElement:{viewport:v}}}=S;if(!v.hasVolumeId(p)){n.getDisplaySetsUIDsForViewport(v.id).forEach((e=>{const t=w.cache.getVolumes().find((t=>t.volumeId.includes(e)));w.utilities.isEqual(t.dimensions,d.dimensions)&&w.utilities.isEqual(t.spacing,d.spacing)&&(y=t)}))}const{ptLower:f,ptUpper:T,ctLower:I,ctUpper:b}=U(u,[y,h],t);return 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a;try{a=E.utilities.segmentation.createMergedLabelmapForIndex(t)}catch(e){return void console.error("commandsModule::getTotalLesionGlycolysis",e)}const{referencedVolumeId:n,spacing:o}=t[0];n||console.error("commandsModule::getTotalLesionGlycolysis:No referencedVolumeId found");const i=w.cache.getVolume(n),r=a.getScalarData();r.length!==i.getScalarData().length&&console.error("commandsModule::getTotalLesionGlycolysis:Labelmap and ptVolume are not the same size");let s=0,l=0;for(let e=0;e<r.length;e++)0!==r[e]&&(s+=i.getScalarData()[e],l+=1);return s/l*l*o[0]*o[1]*o[2]*.001},setStartSliceForROIThresholdTool:()=>{const{viewport:e}=u(),{focalPoint:t,viewPlaneNormal:a}=e.getCamera(),n=g(_)[0],o=E.annotation.state.getAnnotation(n),{handles:i}=o.data,{points:r}=i,s=e.getCurrentImageIdIndex();o.data.startSlice=s;const l=r.map((e=>{const n=O.eR.create();O.eR.subtract(n,t,e);const o=O.eR.dot(n,a),i=O.eR.create();return O.eR.scaleAndAdd(i,e,a,o),i}));i.points=l,o.invalidated=!0,e.render()},setEndSliceForROIThresholdTool:()=>{const{viewport:e}=u(),t=g(_)[0],a=E.annotation.state.getAnnotation(t),n=e.getCurrentImageIdIndex();a.data.endSlice=n,a.invalidated=!0,e.render()},createTMTVRTReport:()=>{const e=E.annotation.state.getAnnotationManager(),a=[];Object.keys(e.annotations).forEach((t=>{const n=e.annotations[t],o=_.reduce(((e,t)=>[...e,...n[t]??[]]),[]);a.push(...o)})),t.runCommand("exportRTReportForAnnotations",{annotations:a})},getSegmentationCSVReport:({segmentations:e})=>{e&&e.length||(e=c.getSegmentations());let t={};for(const a of e){const{id:e,label:n,cachedStats:o}=a,i={id:e,label:n};if(!o){t[e]=i;continue}Object.keys(o).forEach((e=>{"object"!=typeof o[e]?i[e]=o[e]:Object.keys(o[e]).forEach((t=>{i[`${e}_${t}`]=o[e][t]}))}));const r=c.getLabelmapVolume(e);if(!r){t[e]=i;continue}const s=r.referencedVolumeId;i.referencedVolumeId=s;const l=c.getLabelmapVolume(s);if(!l){t[e]=i;continue}if(!l.imageIds||!l.imageIds.length){t[e]=i;continue}const m=l.imageIds[0],p=T.Ay.classes.MetadataProvider.get("instance",m);p?t[e]={...i,PatientID:p.PatientID??"000000",PatientName:p.PatientName.Alphabetic,StudyInstanceUID:p.StudyInstanceUID,SeriesInstanceUID:p.SeriesInstanceUID,StudyDate:p.StudyDate}:t[e]=i}return t},exportRTReportForAnnotations:({annotations:e})=>{j(e)},setFusionPTColormap:({toolGroupId:e,colormap:a})=>{const n=s.getToolGroup(e),{viewportMatchDetails:o}=r.getMatchDetails(),i=y.getMatchingPTDisplaySet({viewportMatchDetails:o});if(!i)return;const c=n.getViewportIds();let m=[];c.forEach((e=>{t.runCommand("setViewportColormap",{viewportId:e,displaySetInstanceUID:i.displaySetInstanceUID,colormap:{name:a}}),m.push(l.getCornerstoneViewport(e))})),m.forEach((e=>{e.render()}))}},h={setEndSliceForROIThresholdTool:{commandFn:y.setEndSliceForROIThresholdTool},setStartSliceForROIThresholdTool:{commandFn:y.setStartSliceForROIThresholdTool},getMatchingPTDisplaySet:{commandFn:y.getMatchingPTDisplaySet},getPTMetadata:{commandFn:y.getPTMetadata},createNewLabelmapFromPT:{commandFn:y.createNewLabelmapFromPT},setSegmentationActiveForToolGroups:{commandFn:y.setSegmentationActiveForToolGroups},thresholdSegmentationByRectangleROITool:{commandFn:y.thresholdSegmentationByRectangleROITool},getTotalLesionGlycolysis:{commandFn:y.getTotalLesionGlycolysis},calculateSuvPeak:{commandFn:y.calculateSuvPeak},getLesionStats:{commandFn:y.getLesionStats},calculateTMTV:{commandFn:y.calculateTMTV},exportTMTVReportCSV:{commandFn:y.exportTMTVReportCSV},createTMTVRTReport:{commandFn:y.createTMTVRTReport},getSegmentationCSVReport:{commandFn:y.getSegmentationCSVReport},exportRTReportForAnnotations:{commandFn:y.exportRTReportForAnnotations},setFusionPTColormap:{commandFn:y.setFusionPTColormap}};return{actions:y,definitions:h,defaultContext:"TMTV:CORNERSTONE"}},K="roi_stat",X=[{value:K,label:"Max",placeHolder:"Max"},{value:"range",label:"Range",placeHolder:"Range"}];const Z=function({config:e,dispatch:t,runCommand:a}){const{t:n}=(0,I.Bd)("ROIThresholdConfiguration");return h.createElement("div",{className:"bg-primary-dark flex flex-col space-y-4"},h.createElement("div",{className:"flex items-end space-x-2"},h.createElement("div",{className:"flex w-1/2 flex-col"},h.createElement(f.l6,{label:n("Strategy"),closeMenuOnSelect:!0,className:"border-primary-main mr-2 bg-black text-white ",options:X,placeholder:X.find((t=>t.value===e.strategy)).placeHolder,value:e.strategy,onChange:({value:e})=>{t({type:"setStrategy",payload:{strategy:e}})}})),h.createElement("div",{className:"w-1/2"},h.createElement(f.xA,null,h.createElement(f._H,{size:"initial",className:"px-2 py-2 text-base text-white",color:"primaryLight",variant:"outlined",onClick:()=>a("setStartSliceForROIThresholdTool")},n("Start")),h.createElement(f._H,{size:"initial",color:"primaryLight",variant:"outlined",className:"px-2 py-2 text-base 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ee=function({servicesManager:e,commandsManager:t}){const{segmentationService:a}=e.services,[n,o]=(0,h.useState)(null),i=(0,h.useCallback)(((e,a={})=>t.runCommand(e,a)),[t]),[r,s]=(0,h.useReducer)(Q,{strategy:Y,ctLower:-1024,ctUpper:1024,ptLower:2.5,ptUpper:100,weight:.41}),l=(0,h.useCallback)((()=>{const e=n,t=E.segmentation.segmentIndex.getActiveSegmentIndex(e);i("thresholdSegmentationByRectangleROITool",{segmentationId:e,config:r,segmentIndex:t})}),[n,r]);return(0,h.useEffect)((()=>{const e=a.getSegmentations();if(!e.length)return;const t=e.find((e=>e.isActive));o(t.id)}),[]),(0,h.useEffect)((()=>{const e=a.EVENTS.SEGMENTATION_ADDED,t=a.EVENTS.SEGMENTATION_UPDATED,n=[];return[e,t].forEach((e=>{const{unsubscribe:t}=a.subscribe(e,(()=>{const e=a.getSegmentations();if(!e.length)return;const t=e.find((e=>e.isActive));o(t.id)}));n.push(t)})),()=>{n.forEach((e=>{e()}))}}),[]),h.createElement("div",{className:"invisible-scrollbar mb-2 flex flex-col overflow-y-auto 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te={id:n,preRegistration({servicesManager:e,commandsManager:t,extensionManager:a,configuration:n={}}){!function({servicesManager:e}){const{measurementService:t,displaySetService:a,cornerstoneViewportService:n}=e.services;(0,E.addTool)(E.RectangleROIStartEndThresholdTool);const{RectangleROIStartEndThreshold:o}=L(t,a,n),i=t.getSource("Cornerstone3DTools","0.1");t.addMapping(i,"RectangleROIStartEndThreshold",o.matchingCriteria,o.toAnnotation,o.toMeasurement)}({servicesManager:e,commandsManager:t,extensionManager:a,configuration:n})},getToolbarModule:function({commandsManager:e,servicesManager:t}){return[{name:"tmtv.RectangleROIThresholdOptions",defaultComponent:()=>ee({commandsManager:e,servicesManager:t})}]},getPanelModule:M,getHangingProtocolModule:y,getCommandsModule:({servicesManager:e,commandsManager:t,extensionManager:a})=>z({servicesManager:e,commandsManager:t,extensionManager:a})},ae=te}}]);
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